CF836599

Overview
NameCF836599
Unique NameCF836599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_RAT (Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.686e-22
Identity = 58/193 (30.05%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  155 LAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLLDYEKIXXXXXXXXXXXXXXLTTHNPQVILSKEAVYKAQHXXXXXXXXXXXXXLQRAMRSMKKQQRLSSEKSSLTYYSPLYHLIDPQGFA 733
            L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  + T A+ +L  + EL+RR +W D +T N I  ACF   ++I++AAL+F L  ++                     + +L + A  K                L++AM+ +KKQ++   +K  +  +S ++ + DPQ FA
Sbjct:  119 LELFFELLRCRDKLLRKTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKITKILVAALTFFLGKDEEEKQDSDSESEDDGP----TARDLLVQYATGK--------KGSKNKKKLEKAMKVLKKQKK--KKKPEVFNFSAIHLIHDPQDFA 297          

HSP 2 Score: 34.2686 bits (77), Expect = 1.686e-22
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 3
Query:   12 YRKQLAEFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLISKPPL 158
            Y + L+EFP +L + L  +   L   LR    +ALILL N+ LI+   L
Sbjct:   70 YPEHLSEFPQELKDLLSYNHTVLDPDLRMTFCKALILLRNKNLINPSDL 118          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_DICDI (Protein SDA1 homolog OS=Dictyostelium discoideum GN=sdad1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.274e-22
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  155 LAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            L++F +L  + D+ LR L +SH++  IK  N K KN+  NR LQN MF+++  + E  ++ +L  + EL R+K+W D +T N I    F  +S+I+I  L+F L
Sbjct:  114 LSLFFKLFRVHDKPLRSLLYSHIVADIKNTNLKQKNQKLNRTLQNFMFTMMNDDSEIASKMSLKVMIELFRKKIWHDTKTVNVISNGVFSKNSKILITTLNFFL 217          

HSP 2 Score: 36.965 bits (84), Expect = 6.274e-22
Identity = 17/44 (38.64%), Postives = 30/44 (68.18%), Query Frame = 3
Query:   12 YRKQLAEFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLI 143
            Y K+L+EFP Q+++ L+++   L   LR  + ++LIL+ NR L+
Sbjct:   65 YPKELSEFPKQISDLLENNCNNLEPELRRILAKSLILMRNRNLL 108          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_NEMVE (Protein SDA1 homolog OS=Nematostella vectensis GN=sdad1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.703e-21
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            K  +   + L +F EL    D+ LR++ ++H++  IK MN K+KN   N  LQN M+++L+  +   A+++L  L EL++R VW D +T N I  ACF    +I++AAL F L
Sbjct:  116 KDLISPTSILELFFELFRCNDKVLRQVLYTHIVTDIKNMNAKHKNNKVNSTLQNFMYTMLKDSNAVAAKKSLDVLIELYKRNVWKDAKTVNVITTACFSPVPKILVAALKFFL 228          

HSP 2 Score: 30.8018 bits (68), Expect = 6.703e-21
Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 3
Query:   12 YRKQLAEFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLIS 146
            Y   L   P +L + L      + S LR  + +ALILL N+ LIS
Sbjct:   76 YPGHLGSLPQELKDLLHKHHSVMDSDLRMTLCRALILLRNKDLIS 120          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_XENLA (Protein SDA1 homolog OS=Xenopus laevis GN=sdad1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.571e-19
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            K  +     L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  +   A+ +L  + EL+RR +W D +T N I  ACF   ++I++AAL F L
Sbjct:  110 KNLISPSVLLELFFELLRCQDKLLRKTLYTHIVTDIKNINAKHKNNKVNTTLQNFMYTMLRDNNAIAAKISLDVMIELYRRNIWNDAKTVNVITTACFSKVTKILVAALKFFL 222          

HSP 2 Score: 28.8758 bits (63), Expect = 1.571e-19
Identity = 15/45 (33.33%), Postives = 25/45 (55.56%), Query Frame = 3
Query:   12 YRKQLAEFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLIS 146
            +++ L +FP QL   L +    +    R  + +ALI+L N+ LIS
Sbjct:   70 FQQYLEDFPEQLKSLLCTHHTVMDPDQRMTLCKALIMLRNKNLIS 114          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_XENTR (Protein SDA1 homolog OS=Xenopus tropicalis GN=sdad1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.841e-19
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            K  +     L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++++  +   A+ +L  + EL+RR +W D +T N I  +CF   ++I++AAL F L
Sbjct:  110 KNLISPSVLLELFFELLRCQDKLLRKTLYTHIVTDIKNINAKHKNNKVNTTLQNFMYTMVRDNNAIAAKISLDVMIELYRRNIWNDAKTVNVISTSCFSKVTKILVAALKFFL 222          

HSP 2 Score: 29.261 bits (64), Expect = 5.841e-19
Identity = 16/45 (35.56%), Postives = 24/45 (53.33%), Query Frame = 3
Query:   12 YRKQLAEFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLIS 146
            + + L +FP QL   L+     +    R  + +ALILL N+ LIS
Sbjct:   70 FPQYLEDFPEQLKSLLRVHHTVMDPDQRMTLCKALILLRNKNLIS 114          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_MOUSE (Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 59/202 (29.21%), Postives = 103/202 (50.99%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLLDYEKIXXXXXXXXXXXXXXLTTHNPQVILSKEAVYKAQHXXXXXXXXXXXXXLQRAMRSMKKQQRLSSEKSSLTYYSPLYHLIDPQGFA 733
            K  ++  + L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  + T A+ +L  + EL+RR +W D +T N I  ACF   ++I++AAL+F L  ++                     + +L + A  K                L++AM+ +KKQ++   +K  +  +S ++ + DPQ FA
Sbjct:  110 KNLINPSSLLELFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKITKILVAALTFFLGKDEEEKQDSDSESEDDGP----TARDLLVQYATGK--------KGSKNKKKLEKAMKVLKKQKK--KKKPEVFNFSAIHLIHDPQDFA 297          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_HUMAN (Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 59/202 (29.21%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLLDYEKIXXXXXXXXXXXXXXLTTHNPQVILSKEAVYKAQHXXXXXXXXXXXXXLQRAMRSMKKQQRLSSEKSSLTYYSPLYHLIDPQGFA 733
            K  ++  + L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  + T A+ +L  + EL+RR +W D +T N I  ACF   ++I++AAL+F L  ++                     + +L + A  K                L++AM+ +KKQ++   +K  +  +S +  + DPQ FA
Sbjct:  110 KNLINPSSLLELFFELFRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKVTKILVAALTFFLGKDEDEKQDSDSESEDDGP----TARDLLVQYATGKKS--------SKNKKKLEKAMKVLKKQKK--KKKPEVFNFSAILLIHDPQDFA 297          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_BOVIN (Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 43/113 (38.05%), Postives = 70/113 (61.95%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            K  ++  + L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  + T A+ +L  + EL+RR +W D +T N I  ACF   ++I++AAL+F L
Sbjct:  110 KNLINPSSLLELFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVNIVLQNFMYTMLRDSNATAAKISLDVMIELYRRNIWNDAKTVNVITTACFSKVTKILVAALTFFL 222          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_DANRE (Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  128 KPTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICKACFHSSSRIMIAALSFLL 466
            K  V   + L +F EL    D+ LRK  ++H++  IK +N K+KN   N  LQN M+++L+  +   A+ +L  + EL+RR +W D +T N I  ACF   ++I++A L F L
Sbjct:  110 KDLVSPTSLLGLFFELLRCHDKLLRKTLYTHIVTDIKNINAKHKNNKMNTTLQNFMYTMLRDSNPIAAKISLDVMVELYRRNIWNDAKTVNVITTACFSKVTKILVAGLKFFL 222          
BLAST of CF836599 vs. ExPASy Swiss-Prot
Match: SDA1_DROME (Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.170e-16
Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  131 PTVDIQATLAVFMELQTLGDRNLRKLAFSHVIHSIKRMNQKNKNEPKNRALQNIMFSILQAEDETRARRALTTLCELHRRKVWFDERTANAICK-ACFHSSSRIMIAALSFLLDYEK 478
            P +DI   L +F +L    D+NLR    +H++  IK MN K+K+   N +LQ  M+S+L+  +   A+ +   + EL+++ +W D +T N I    CF   +++++ +L F L +++
Sbjct:  114 PALDI---LELFFQLLRCPDKNLRTFLQTHIVTDIKNMNAKHKDMKLNSSLQAFMYSMLKDANPKAAKMSADIMIELYKKNIWNDSKTVNVIATVGCFSKVTKVLVTSLKFFLGHDE 227          

HSP 2 Score: 32.3426 bits (72), Expect = 3.170e-16
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3
Query:   30 EFPSQLAEFLKSSAPTLPSGLRCHVTQALILLVNRQLI 143
            EFP +L++ LK+ A  L   +R    +ALILL N+ L+
Sbjct:   76 EFPKRLSDLLKNYATVLDPAMRNCFVKALILLRNKNLV 113          
The following BLAST results are available for this feature:
BLAST of CF836599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SDA1_RAT1.686e-2230.05Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1... [more]
SDA1_DICDI6.274e-2238.46Protein SDA1 homolog OS=Dictyostelium discoideum G... [more]
SDA1_NEMVE6.703e-2138.05Protein SDA1 homolog OS=Nematostella vectensis GN=... [more]
SDA1_XENLA1.571e-1937.17Protein SDA1 homolog OS=Xenopus laevis GN=sdad1 PE... [more]
SDA1_XENTR5.841e-1935.40Protein SDA1 homolog OS=Xenopus tropicalis GN=sdad... [more]
SDA1_MOUSE9.091e-1929.21Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1... [more]
SDA1_HUMAN2.025e-1829.21Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1... [more]
SDA1_BOVIN7.696e-1838.05Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 S... [more]
SDA1_DANRE4.988e-1737.17Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 ... [more]
SDA1_DROME3.170e-1630.77Protein SDA1 homolog OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836599 ID=CF836599; Name=CF836599; organism=Citrus sinensis; type=EST; length=733bp
CCATGCCGTTTTATCGCAAGCAACTCGCTGAGTTCCCGAGTCAGCTCGCC
GAGTTTTTGAAATCGTCTGCACCAACCTTGCCGTCCGGTCTTAGGTGCCA
CGTCACCCAAGCTCTCATTCTTCTTGTAAACCGACAGTTGATATCCAAGC
CACCCTTGCGGTATTCATGGAACTTCAAACTCTGGGTGATCGGAATCTGA
GAAAGTTGGCATTTTCTCATGTTATTCATAGTATCAAGCGCATGAATCAG
AAGAATAAGAATGAACCAAAAAATCGAGCACTTCAGAACATCATGTTCTC
AATCCTACAGGCAGAGGATGAAACTAGAGCTAGGAGGGCGCTTACTACAC
TATGTGAGCTTCATCGGAGAAAGGTGTGGTTCGATGAGAGAACAGCAAAT
GCTATCTGTAAAGCATGTTTTCATTCTTCATCAAGGATCATGATTGCTGC
TCTTTCATTTCTCCTTGACTATGAGAAGATTGAAGATGACGATGATAGTG
ATGCTAATAGTGATGAAGATGACTTGACCACTCACAATCCACAAGTCATC
CTCAGTAAAGAAGCTGTTTATAAGGCACAACACAAAGGTACAACTTCTAG
CAAAAAGAAAAAGAAAGCAAAACTGCAGCGTGCCATGCGTAGCATGAAAA
AGCAGCAACGCCTGTCTTCAGAAAAAAGCTCTTTGACTTATTACTCTCCT
CTTTACCATCTAATTGATCCGCAGGGATTTGCT
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