CF836604

Overview
NameCF836604
Unique NameCF836604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836604_ssr78 microsatellite CF836604_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CF836604_ssr58 microsatellite CF836604_ssr58:58..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1610 contig Csv1_Contig1610:277..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 3.977e-88
Identity = 145/183 (79.23%), Postives = 163/183 (89.07%), Query Frame = -2
Query:  175 NKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSFFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVRSNS--RVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 717
            NKA++++LPPLWSGRFWGRHGC FD SGRG CATGDCGGS  CNG GG PPATLAEITLG + DFYDVSLVDGYN+AMSI+P++GSG+CSYAGCVS LN MCP GLQVRS +  RVVACKSAC AFNSP+YCCTG FGNPQSCKPT YS+IFK ACP+AYSYAYDDPTSIATC+ +NY++TFC
Sbjct:   56 NKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFC 238          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.412e-61
Identity = 113/175 (64.57%), Postives = 125/175 (71.43%), Query Frame = -2
Query:  175 PPLWSGRFWGRHGCRFDASGRGRCATGDCGGSFFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 693
            P  WSGRFW R GC FDASG GRC TGDCGG   CNG GG PP TLAE TL     +DFYDVSLVDGYN+ + I P  GSG C YAGCVS LN  CP  L+V   + VVACKSAC  FN+ +YCC G+   P++C PT YSRIFK ACP AYSYAYDD TS  TCTG+NY +TFC
Sbjct:   66 PAGWSGRFWARTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.906e-54
Identity = 97/182 (53.30%), Postives = 126/182 (69.23%), Query Frame = -2
Query:  175 TIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 705
            T++ P  WSGRFWGR  C  D+SG+ +C+TGDCG G   CNG G SPPA+L E+TL     QDFYDVSLVDG+N+ + + P  GSG C+   C + +N +CP  L  + S+  V+ CKSAC A N P+YCCTG++G P +C PT +S++FK  CP+AYSYAYDD +S  TC G  NY +TFC
Sbjct:   64 TVQAP--WSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.369e-54
Identity = 94/180 (52.22%), Postives = 118/180 (65.56%), Query Frame = -2
Query:  175 IRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSFFCNGIGGSPPATLAEITLGQQQD---FYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVRSNS-RVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 702
            + +P  WSGR W R GC FD+ GRG CATGDCGG   CNG  G+ PAT+ E+TLG       FYDVSLVDG+N  +S+  + G   C  A C + +N+ CP  L+VR    RV  C+SAC A    RYCCTG + +P +C+PT++S +FKA CPRAYSYAYDD TS+  C    YL+TFC
Sbjct:   69 LEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.435e-53
Identity = 100/182 (54.95%), Postives = 126/182 (69.23%), Query Frame = -2
Query:  175 TIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 705
            ++  P  WSGRF+GR  C  DASG+  CAT DCG G   CNG G +PPATL EIT+     QDFYDVSLVDG+N+ MS+ P  G+GKC  + C + +N +CP  LQV+ S+  V+ACKSAC AFN P+YCCT     P++C P  YS++FK  CP+AYSYAYDD +S  TC+G   YL+TFC
Sbjct:   64 SVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 93/182 (51.10%), Postives = 122/182 (67.03%), Query Frame = -2
Query:  175 TIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 705
            ++  P  WSGRFWGR  C  DA+G+  C T DCG G   CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C + +N+ CP  LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:   30 SVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.477e-50
Identity = 93/182 (51.10%), Postives = 122/182 (67.03%), Query Frame = -2
Query:  175 TIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 705
            ++  P  WSGRFWGR  C  DA+G+  C T DCG G   CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C + +N +CP  LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:   64 SVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 97/184 (52.72%), Postives = 117/184 (63.59%), Query Frame = -2
Query:  175 AYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 711
            ++ +  P  W+GRFW R GC  DASG+  CAT DC  G   CNG G  PPATLAE  +  G  QDFYDVSLVDG+N+ MS+ P  G+G C  A C + +N +CP  LQ + S+  VVAC SAC  F +P+YCCT     P++C PT YS IF  ACP AYSYAYDD     TC G  NY +TFC
Sbjct:   61 SFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.806e-48
Identity = 95/184 (51.63%), Postives = 116/184 (63.04%), Query Frame = -2
Query:  175 AYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDC-GGSFFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQ-VRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 711
            ++ +  P  WSGRFW R  C  DASG+  C T DC  G   CNG  G PPATLAE T+  G  QDFYDVSLVDG+N+ MS+ P  G+G C    C + +NL+CP  LQ + S+  VVAC SAC  F  P+YCCT      + C PT YS+IF   CP AYSYA+DD   + TC+G  NYL+TFC
Sbjct:   58 SFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
BLAST of CF836604 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.997e-47
Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = -2
Query:  175 TIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSFFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSALNLMCPGGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTVYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 705
            T+ +   W GRFW R  C  + SG+  C T DC  G   CNG G  PPA+L EI +   +  DFYDVSLVDGYN+ +S+    G+G C    C + +N +CP  LQV+ S++ V+ACKSAC AFN P+YCCTG+F   ++C  T YSRIFK  CP+AYSYAYDD TS  TC+G+ +Y++TFC
Sbjct:   62 TLGVQAPWKGRFWARTRCTTN-SGKFTCETADCSTGQVACNGNGAIPPASLVEINIAANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
The following BLAST results are available for this feature:
BLAST of CF836604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLPH_ARATH3.977e-8879.23Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH5.412e-6164.57Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PYRPY4.906e-5453.30Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLPH_ORYSJ8.369e-5452.22Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP1_PRUPE2.435e-5354.95Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TP1B_MALDO1.131e-5051.10Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TP1A_MALDO1.477e-5051.10Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP_PRUAV7.332e-5052.72Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLP2_PRUPE1.806e-4851.63Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA1.997e-4751.10Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836604 ID=CF836604; Name=CF836604; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGATACCAACAAACTACCGTACCATGATATTATT
ACTAGTAAACATAACATAACATATGATATAATAATAATAATCTTATCTAT
TACAAATGAACTTGATAGCGTATGTAGTAGTAGTGGTAAATAATGGGTAT
AAAAATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGC
CGGTGCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCT
CTGGGACAAGCGGCCTTGAAAATCCTGGAGTAAACAGTGGGCTTGCAGGA
TTGAGGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAG
CGAAACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGT
AGCCCCCCGGGACACATCAAGTTCAGGGCACTCACACACCCAGCGTAGCT
GCATTTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAAC
CGTCGACCAGGCTCACGTCGTAAAAATCCTGCTGCTGCCCCAGCGTGATT
TCGGCGAGGGTGGCCGGCGGGCTGCCCCCTATGCCGTTGCAAAAAAACGA
TCCGCCGCAGTCCCCGGTGGCGCAGCGGCCCCGGCCTGAGGCGTCGAACC
TGCATCCATGGCGACCCCAAAAGCGCCCGGACCAAAGGGGCGGTAGGCGT
ATGGTGTAGGCCTTGTTT
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