CF836616

Overview
NameCF836616
Unique NameCF836616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9975 contig Csv1_Contig9975:29..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 437.187 bits (1123), Expect = 4.479e-122
Identity = 220/231 (95.24%), Postives = 226/231 (97.84%), Query Frame = 1
Query:   49 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEGQKA++ LKDVYA WVPE+RILTTNLWSA+LSKLAANAFLAQRISSVN
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVN 231          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 2.300e-118
Identity = 213/231 (92.21%), Postives = 222/231 (96.10%), Query Frame = 1
Query:   49 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRETPEG KAV+ LK+VYAHWVPE +I+TTNLWSA+LSKLAANAFLAQRISSVN
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVN 231          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 3.322e-117
Identity = 212/231 (91.77%), Postives = 220/231 (95.24%), Query Frame = 1
Query:   49 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQCRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SDKIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRETPEG KAV+ LK+VYA+WVPE +I+TTNLWSA+LSKLAANAFLAQRISSVN
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVN 231          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.217e-88
Identity = 160/231 (69.26%), Postives = 190/231 (82.25%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +K+CCIGAGYVGGPT AV+ALKCP I + +VD S  RI  WNSD+LPIYEPGLD VVK+CR  NLFFSTD+E  + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+KIVVEKSTVPV+ AE+I  IL  N K GI + ILSNPEFLAEGTAI DL N DRVLIGG ETPEG +AV+ L  +Y HW+P+  ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSIN 231          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.778e-86
Identity = 159/230 (69.13%), Postives = 187/230 (81.30%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA  CP I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQKAV+AL  VY HWVP+++ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSIN 235          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.322e-86
Identity = 159/230 (69.13%), Postives = 186/230 (80.87%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA  CP I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSIN 235          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.032e-86
Identity = 157/230 (68.26%), Postives = 188/230 (81.74%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA  CP I+V VVD++ +RINAWNSD LPIYEPGL  VV+ CRG+NLFFST ++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++PEGQKAV+AL  VY HWVP+++ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSIN 235          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.960e-86
Identity = 158/230 (68.70%), Postives = 187/230 (81.30%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA  CP I V VVD++ +RINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP+++ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSIN 235          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 6.755e-86
Identity = 159/230 (69.13%), Postives = 185/230 (80.43%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA  CP I V VVDI+ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS++LSKL ANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSIN 235          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.718e-85
Identity = 158/230 (68.70%), Postives = 185/230 (80.43%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KICCIGAGYVGGPT +VIA   P I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ETPEGQ+AV+AL  VY HWVP ++ILTTN WS++LSKLAANAFLAQRISS+N
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSIN 235          
The following BLAST results are available for this feature:
BLAST of CF836616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UGDH_SOYBN4.479e-12295.24UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH2.300e-11892.21Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH3.322e-11791.77Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME7.217e-8869.26UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_MOUSE1.778e-8669.13UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_HUMAN2.322e-8669.13UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_CHICK3.032e-8668.26UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_RAT3.960e-8668.70UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_BOVIN6.755e-8669.13UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB5.718e-8568.70UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836616 ID=CF836616; Name=CF836616; organism=Citrus sinensis; type=EST; length=743bp
TTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGTAAAGGAAAAT
GGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGGCCGACAATGG
CAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTTGATATC
TCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGA
GCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCT
TCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTT
TCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTGGCAAAGCTGC
AGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCCGATGTGTCAA
AGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCT
GAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCA
GATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATC
TTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGC
CAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGA
AGACCGAATTTTGACCACCAACCTCTGGTCTGCAAAGCTTTCGAAGCTTG
CAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGC
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