CF836619

Overview
NameCF836619
Unique NameCF836619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836619 vs. ExPASy Swiss-Prot
Match: SPT_ARATH (Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = -2 
Query:  361 DKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPMWLPG-VLPSMQLPQMGMVFDEGNGLLN-TDGGTETFSANEESSVQTGFNLSSQCTISDQPVALPSAANISTSETAFGLEPLIQAHYGPFTLPSSSKEICSEGA-PHLHLDMNFNGKN 804
            DKASMLDEAIEYLKQLQLQVQMLTMRNG++LHP+ LPG  L  +QL Q+       + LLN T+    T +A E                            I+T  +++ LEP I++H+GPF L +S  E+  EG   H  L++  +  N
Sbjct:  231 DKASMLDEAIEYLKQLQLQVQMLTMRNGINLHPLCLPGTTLHPLQLSQIRPPEATNDPLLNHTNQFASTSNAPE---------------------------MINTVASSYALEPSIRSHFGPFPLLTSPVEMSREGGLTHPRLNIGHSNAN 354
The following BLAST results are available for this feature:
BLAST of CF836619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPT_ARATH1.178e-1741.72Transcription factor SPATULA OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03E14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836619 ID=CF836619; Name=CF836619; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTGGAAATTTTCTTCTTCATTTTCTTCAAATCCCTCTA
ACACAGTTCCAGTTCATACAAGGCATAATAGAAGCATCCGCACAATATAC
AAAAAAAAATTGGTTCCGTCATTGATAAGACTCCATATGCTTCTGAAATA
GATTTTTATATAAGTTAAACAGATGTCAACAGTTCAAACTGTTGTGGCTT
GCGACATAAGAAAGCTGATTAACTGTGAAACGTCAGCAATTTTTAGGATT
ATTTGCAGTTTCTATGGTGTTTGACCAATTGCAACTCTTTAAGAAGGTGG
CTATTGTGTCATACGCTACATCTTTGAGGATAAAGATCTTGGCTACGACA
CGCCAGATGAGTTCTTTCCATTGAAATTCATATCCAAATGCAGATGAGGT
GCACCTTCACTGCAGATTTCCTTGGAAGAAGAGGGGAGAGTGAAGGGTCC
ATAGTGAGCCTGAATCAGTGGTTCAAGTCCAAATGCAGTTTCTGATGTGC
TAATATTTGCTGCTGAAGGTAAGGCAACTGGCTGATCAGAGATGGTACAT
TGGCTGGAAAGATTAAAACCAGTTTGCACCGAGCTTTCTTCATTTGCAGA
AAATGTTTCGGTTCCTCCATCGGTATTCAACAGTCCATTACCCTCATCAA
ATACCATTCCCATCTGAGGCAGTTGCATAGATGGTAGTACTCCTGGTAAC
CACATTGGGTGCAAACTCAATCCATTTCTCATTGTTAACATCTGTACTTG
GAGTTGAAGCTGCTTGAGATATTCGATAGCCTCATCCAGCATTGAAGCTT
TGTCA
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