CF836621

Overview
NameCF836621
Unique NameCF836621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836621_ssr115 microsatellite CF836621_ssr115:115..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4056 contig Csv1_Contig4056:2..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.936e-50
Identity = 89/166 (53.61%), Postives = 124/166 (74.70%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.936e-50
Identity = 89/166 (53.61%), Postives = 124/166 (74.70%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.167e-49
Identity = 89/166 (53.61%), Postives = 124/166 (74.70%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 2.600e-49
Identity = 88/166 (53.01%), Postives = 124/166 (74.70%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.691e-46
Identity = 84/166 (50.60%), Postives = 122/166 (73.49%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.691e-46
Identity = 85/166 (51.20%), Postives = 122/166 (73.49%), Query Frame = -2 
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA VST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  261 QNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of CF836621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT8.936e-5053.61Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA8.936e-5053.61Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN1.167e-4953.61Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE2.600e-4953.01Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY3.396e-4953.01Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR3.396e-4953.01Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA3.396e-4953.01Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN3.396e-4953.01Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_HUMAN2.691e-4650.60Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA2.691e-4651.20Rab GDP dissociation inhibitor beta OS=Canis famil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836621 ID=CF836621; Name=CF836621; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTAGCTGAAAAATTTAAGATATAATTTAAGCAAATTAA
AGATGCATGTTTGAAATCTACACATTAGTTCCCACGGCGAACAATTAAAA
CAAGATTCCATTACATAATAATAATAATAAAATCACCAACTATGAGAAAC
AGAAACCATGACAAAGTCCAAGTGTCCAACCCCCACATTCTTTCGAGCTT
TATCCCACTGACGGCATTACATGCGCAAACATGAACGGGGAGTTGCAGAT
TCCTCATTCTTCTGCAGCACTGGCAGCACTTAAATCCACACTGAGGTCAA
GAACCTTTCCGGTTATCATGGTATACATGTTCAGTACATCCGTGACAGTT
GACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGAGATAAAGCAATTGTC
CAAAGAAGGTTCATTAACTGGTTCATATCTGTCATATATATCATAGAATA
TTTCATCGACTGGACCCAAAAGATCAATTCCAGGCTTAAGTTCAGTCTGT
GGATGATCAGTCTCTGCCTCAGTCGATACGAATGCAATGAATTTGCCCTT
TGGAGCAACATTGTGGGAGTAGGAACAACAGAAGAGGTACATGTCTGATC
TACGACCCAACTGTTTTTGCGGAAGGATAACCTGCACTGAATGGGAATCA
TTGGTGTTTGGGATTGGGTGGCTCATAATAGCGATTGCCCTAGCAACCCT
GCCAACCTTCCTCACCTTGTTGGGCAAATAGGAAGGATCACAAACAACTT
TCTTGCACTTTGCAGTTTCCCCTTCTGACGTGACACCGACTACTTTACCT
TCTTCA
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