CF836626

Overview
NameCF836626
Unique NameCF836626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836626_ssr96 microsatellite CF836626_ssr96:96..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1150 contig Csv1_Contig1150:2..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.305e-39
Identity = 91/187 (48.66%), Postives = 105/187 (56.15%), Query Frame = -1
Query:  230 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGSGSRVLPDXXXXXXXXXXXXXXXXGTLPIRASAVGHHPNNNSIFNPVHNLRVSSFEGQAPYTLEMLQGSGSFGFPGYGNALGFYMNEGQQQDNV----------LSRAKEEPRDHDTFFESLL 760
            DDGYRWRKYGQKVVKGNPNPRSYYKCT  GCPVRKHVERASHD RAVITTYEGKHNHDVPAA GSG                       ++PIR +A+  H N  +               QAPYTL+ML  + +   P      G+ MN      N+           SRAKEEP +  +FF+S +
Sbjct:  362 DDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG------------YATNRAPQDSSSVPIRPAAIAGHSNYTT-------------SSQAPYTLQMLHNNNTNTGP-----FGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETSFFDSFM 518          

HSP 2 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            +DGY WRKYGQK VKG+ NPRSYYKCT P CP +K VER S + +     Y+G HNH  P
Sbjct:  184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVER-SLEGQITEIVYKGSHNHPKP 242          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.207e-30
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = -1
Query:  566 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGS 760
            DDGYRWRKYGQKVVKGNPNPRSYYKCT PGC VRKHVERASHD ++VITTYEGKHNHDVPAA  S
Sbjct:  487 DDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNS 551          

HSP 2 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            +DGY WRKYGQK+VKG+  PRSYYKCT+P C V+K VER S +       Y+G HNH  P
Sbjct:  273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVER-SREGHITEIIYKGAHNHLKP 331          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.015e-28
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  560 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGSGS 760
            DDGYRWRKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP +  S +
Sbjct:  381 DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSN 447          

HSP 2 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            DDGY WRKYGQK VKG+  PRSYYKCTHP C V+K  ER SHD +     Y+G H+H  P
Sbjct:  211 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITDIIYKGTHDHPKP 269          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.146e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = -1
Query:  575 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAA 760
            DDGYRWRKYGQKVVKGNP+PRSYYKCT P C VRKHVERAS D +AVITTYEGKHNHDVPAA
Sbjct:  306 DDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAA 367          

HSP 2 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            DDGY WRKYGQK +KG   PRSYYKCTH  CPV+K VER+S D +     Y+G+H+H+ P
Sbjct:  167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHERP 225          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  545 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGSGSRVLPD 760
            DDGYRWRKYGQKVVKGNP PRSYYKCT P C VRKHVERA+ D +AV+TTYEGKHNHDVPAA  S  ++ P+
Sbjct:  415 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPN 486          

HSP 2 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = -1
Query:  560 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGSGS 760
            DDGY WRKYGQK VKG+  PRSYYKCTHP CPV+K VER S D +     Y+G+HNH++P   G+ +
Sbjct:  250 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVER-SLDGQVTEIIYKGQHNHELPQKRGNNN 315          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = -1
Query:  566 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGS 760
            DDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TTYEGKHNHD+PAA  S
Sbjct:  409 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSS 473          

HSP 2 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  557 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGSGSR 760
            DDGY WRKYGQK VKG+  PRSYYKCT+PGCPV+K VER S D +     Y+G+HNH+ P     G++
Sbjct:  229 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVER-SLDGQVTEIIYKGQHNHEPPQNTKRGNK 295          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.074e-25
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = -1
Query:  566 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAACGS 760
            DDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS DF++V+TTY GKH H VPAA  S
Sbjct:  372 DDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNS 436          

HSP 2 Score: 78.5666 bits (192), Expect = 4.226e-14
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            DDGY WRKYGQK+VKG+  PRSYYKCTHP C  +K VER S +   +   Y G H H  P
Sbjct:  178 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVER-SREGHIIEIIYTGDHIHSKP 236          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.641e-24
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            DDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHVERA  D ++VITTYEGKH H +P
Sbjct:  234 DDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIP 293          

HSP 2 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            DDGY WRKYGQK VKG+ NPRSY+KCT+P C  +K VE +    + +   Y+G HNH  P
Sbjct:  117 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKP 176          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 45/60 (75.00%), Postives = 55/60 (91.67%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            +DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +ITTYEGKH+HD+P
Sbjct:  307 NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 366          

HSP 2 Score: 77.7962 bits (190), Expect = 7.209e-14
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  575 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAA 760
            +DGY WRKYGQK+VKGN   RSYY+CTHP C  +K +ER++   + V T Y G+H+H  P A
Sbjct:  111 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGG-QVVDTVYFGEHDHPKPLA 171          
BLAST of CF836626 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.981e-23
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = -1
Query:  575 DGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVPAA 757
            DG+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:  329 DGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389          

HSP 2 Score: 72.0182 bits (175), Expect = 3.956e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -1
Query:  581 DDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDFRAVITTYEGKHNHDVP 760
            +DGY WRKYGQK VK + NPRSY+KCT+P C  +K VE AS D +     Y+G HNH  P
Sbjct:  166 NDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETAS-DGQITEIIYKGGHNHPKP 224          
The following BLAST results are available for this feature:
BLAST of CF836626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK33_ARATH1.305e-3948.66Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY2_ARATH4.207e-3089.23Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK20_ARATH3.015e-2882.09Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK58_ARATH1.146e-2788.71Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRKY3_ARATH4.353e-2776.39Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY4_ARATH5.685e-2783.08Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK34_ARATH4.074e-2580.00Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK26_ARATH2.641e-2481.67Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRKY1_ARATH4.505e-2475.00WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK25_ARATH4.981e-2375.41Probable WRKY transcription factor 25 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03E19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836626 ID=CF836626; Name=CF836626; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTCTTTTTAAGCAACATAAGCTTCTATATGTATAT
ATACCTACAATTTTGAATATACATTACAAAATGGGGTAAAAATATACAAA
CAAACAAACAAACAGAATGCAATTAACAAATGAAGGGAATATTCTTATTC
TTCTGAATTCTATCAGTCTAACTCCCTTCCAAATGGGTAGTAACTGTAAA
ATCTTTCCAATTCTGTGCAAGTTTCAAAATAGCAATGACTCGAAAAATGT
GTCATGATCCCTTGGTTCTTCCTTGGCTCTTGATAACACATTGTCTTGCT
GCTGACCCTCATTCATATAAAACCCCAAAGCATTTCCATATCCAGGAAAG
CCGAAGCTGCCGCTGCCCTGCAACATTTCGAGGGTATAGGGTGCTTGGCC
TTCAAATGAGGATACCCTCAAATTGTGAACAGGATTGAAAATCGAGTTGT
TGTTAGGATGATGACCCACCGCCGATGCCCTTATGGGCAGCGTCCCGTTG
TTGTTACTATTGCCGTTACTGTTACGGTTATTATTGCTGCTGTTATCCGG
CAAAACCCTGCTGCCGCTGCCGCAAGCTGCCGGAACATCATGGTTGTGCT
TTCCCTCATAGGTTGTGATCACTGCTCTAAAATCGTGTGATGCTCTCTCA
ACATGCTTTCTCACTGGACAACCTGGATGCGTACACTTGTAATAACTCCT
TGGATTTGGATTCCCCTTTACAACTTTTTGGCCATATTTCCTCCATCTGT
ACCCATCATC
back to top