CF836630

Overview
NameCF836630
Unique NameCF836630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836630_ssr10 microsatellite CF836630_ssr10:10..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1185 contig Csv1_Contig1185:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL6_MOUSE (Oxysterol-binding protein-related protein 6 OS=Mus musculus GN=Osbpl6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  289 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   VTL
Sbjct:  595 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVTL 742          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL3_HUMAN (Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 67/147 (45.58%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A +   P  R+VY +++A+S Y +  YR   KPFNPVLGET+E +    G  F +EQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL
Sbjct:  529 WNILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLERMVYVAAFAISAYASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTL 674          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL3_MOUSE (Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 67/147 (45.58%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A     P  R+VY +++A+S Y +  +R   KPFNPVLGET+E +    G  F AEQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL
Sbjct:  497 WSILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESGNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTL 642          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL6_HUMAN (Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/149 (44.97%), Postives = 99/149 (66.44%), Query Frame = 1
Query:  289 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   V L
Sbjct:  570 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVML 717          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL7_HUMAN (Oxysterol-binding protein-related protein 7 OS=Homo sapiens GN=OSBPL7 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 69/147 (46.94%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            W +++  IG D+ S V++PV ++EP + LQR+ E +EYS LLD A    DP  R+VY +++A+S Y +  +R   KPFNPVLGET+E      G  FI+EQVSHHPP+SA HAE+E+F +    K + KF G S+++ PVG   V+L
Sbjct:  480 WNILRNNIGKDL-SKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSL 625          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: YB35_SCHPO (Oxysterol-binding protein homolog C2F12.05c OS=Schizosaccharomyces pombe GN=SPBC2F12.05c PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVG 708
            W +++  IG D+  + TLPV  +EP S+LQR+AE MEY+ LLD A   +DPY R++Y +++A S Y +   R  KPFNP+LGET+E  +   G  FI EQVSHHPP+ A ++E+ ++ Y   S +++KF G S D+ P+G
Sbjct:  939 WGILKGMIGKDMTKM-TLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYASTLNRVAKPFNPLLGETYEFCHPQRGFRFIVEQVSHHPPVGAAYSESANWKYYGESSVKSKFYGKSFDISPLG 1077          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 67/174 (38.51%), Postives = 105/174 (60.34%), Query Frame = 1
Query:  181 NGLLGY-EGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDV 696
            +G L Y +GL   N     E++ D   +G  + E+R    K +  Y+G D+ SL++LPV+I EP S LQ M+E ++Y+ LL  A + +  ++ L Y +++  ++Y    R  KPFNP+LGETFE+V+  G   F+AEQVSHHPP+      +E +   + + L++KF GNS +V
Sbjct:    3 SGALNYMKGLVGTNENLQVEESGDN--KGDIEPEQRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCLAYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYTLQLETLLKSKFYGNSSEV 174          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSB11_DICDI (Oxysterol-binding protein 11 OS=Dictyostelium discoideum GN=osbK PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  277 EERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            E++ + WK +   +G D  SLV+LPV+  EP +VL+   E + +  L++ A  C D   RL+Y +++ ++++ +Y R  KPFNP+LGETFE ++  G      EQVSHHPP+      +E F     S + TKF GNS+DV+  G+  + L
Sbjct:   88 EDKKSLWKKVGGLVGKDPMSLVSLPVYFFEPLTVLECQLEPLRFVELIEKASTCSDSIDRLMYLTAFNIAVFSSYTRTAKPFNPLLGETFEYIDKQGRYKSFCEQVSHHPPIGIAQTTSEIFDLQQESWITTKFWGNSLDVFSHGQNHLYL 238          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL1_MOUSE (Oxysterol-binding protein-related protein 1 OS=Mus musculus GN=Osbpl1a PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLEL 696          
BLAST of CF836630 vs. ExPASy Swiss-Prot
Match: OSBL1_HUMAN (Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  295 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTL 726
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLEL 696          
The following BLAST results are available for this feature:
BLAST of CF836630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSBL6_MOUSE2.989e-3045.64Oxysterol-binding protein-related protein 6 OS=Mus... [more]
OSBL3_HUMAN5.099e-3045.58Oxysterol-binding protein-related protein 3 OS=Hom... [more]
OSBL3_MOUSE1.136e-2945.58Oxysterol-binding protein-related protein 3 OS=Mus... [more]
OSBL6_HUMAN1.483e-2944.97Oxysterol-binding protein-related protein 6 OS=Hom... [more]
OSBL7_HUMAN2.530e-2946.94Oxysterol-binding protein-related protein 7 OS=Hom... [more]
YB35_SCHPO1.063e-2745.71Oxysterol-binding protein homolog C2F12.05c OS=Sch... [more]
OSB8_DICDI4.040e-2738.51Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]
OSB11_DICDI2.217e-2538.41Oxysterol-binding protein 11 OS=Dictyostelium disc... [more]
OSBL1_MOUSE1.589e-2341.22Oxysterol-binding protein-related protein 1 OS=Mus... [more]
OSBL1_HUMAN1.589e-2341.22Oxysterol-binding protein-related protein 1 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836630 ID=CF836630; Name=CF836630; organism=Citrus sinensis; type=EST; length=730bp
ACGAAAACGTCTCTCTCTCTATCCTCTCTAAGCTACGTATTCATTCGATA
GCTGCGAGAATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATG
GATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCG
ACTTTCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGA
AGGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATG
AAGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAG
ATGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCC
TGTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGA
TGGAGTACTCCCACCTTCTGGATCTGGCAGATGAGTGCGAGGATCCATAC
ATGAGATTGGTGTATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTA
TCGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAA
TGGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCAC
CCCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGACGT
GACTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATC
CAGTTGGAAGGACACGTGTGACACTTAAAA
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