CF836632

Overview
NameCF836632
Unique NameCF836632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:181..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 7.825e-84
Identity = 160/199 (80.40%), Postives = 173/199 (86.93%), Query Frame = -2
Query:  185 RTTQSTSL---PRISVSAAATSSIEVXXXXXXXXXXXXXSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 772
            R  +S SL   P  SVSAA+++   V             +LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVILLMKK
Sbjct:   36 RPKKSLSLSCRPSASVSAASSA---VDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.651e-83
Identity = 153/197 (77.66%), Postives = 169/197 (85.79%), Query Frame = -2
Query:  185 LRTTQSTSLPRISVSAAATSSIEVXXXXXXXXXXXXXSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 775
            L T QS +L  +  +AA+ +++E               L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE IR NL +LLGADP VVNLKAKTHEKVDSLGENRSIAAHTV+LLM+K
Sbjct:   42 LSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKI--LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.816e-41
Identity = 80/157 (50.96%), Postives = 111/157 (70.70%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E ++  ++ELL A+P+ VN+KA T E++   G    IAA   ILLMKK
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVNVKATTTERLGFTGREEGIAAMATILLMKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 76/159 (47.80%), Postives = 108/159 (67.92%), Query Frame = -2
Query:  185 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 661
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++ +   ++ELL   P  +++KA T EK+   G    IAA     +++K
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSPDAISVKATTTEKLGFTGRGEGIAAQAAATVVRK 382          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.113e-40
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = -2
Query:  185 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 652
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+   +  NL+E LG   T  N+KAKT+EK+   G+   I A   +L+ ++
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLGLPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACWK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACHK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACCZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACCQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain Q1) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
The following BLAST results are available for this feature:
BLAST of CF836632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ARATH7.825e-8480.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CATRO8.651e-8377.662-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC2.816e-4150.962-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH4.803e-4147.80Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_RALME3.113e-4050.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACWK6.935e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACHK6.935e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCZ6.935e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCR6.935e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCQ6.935e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03F01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836632 ID=CF836632; Name=CF836632; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTGAGGCAGCTAAAGACCTTGCCATTACTGAAGCATT
GTTCAAGTATGAAACAAAACCTATCATTGGAAATCTATACCAAGTAAAAA
GTCTTTGTAAGCAGAATACAAATACAACAATGATAATAGGATACAACTGC
TACATTTAAGACAATTCCCAAATCGTTTATTTTACTTCTTCATGAGAAGG
ATCACAGTGTGAGCTGCAATACTTCGATTTTCACCAAGGCTATCAACTTT
TTCATGAGTTTTCGCTTTCAGATTTACAACGGTGGGGTCTGCTCCTAGCA
GTTCAGACAAGTTGGTTCGGATAGTCTCCTTGTATGGGCTCAATTTTGGT
CTTTGAAGAATCAGCGTGGCATCCAAGTTGCCAATCTCATAGCCGGCCTC
ATCCATGAGTCTCACAGCTTCTTTGATAAAAACAGAGGATGGTGCACCCT
TCCACTTAGGATCAGAATCAGGAAATATCTGACCAATATCAGGAAGACCC
AATGCTCCCAAAATTGCATCCACAACACAGTGAAGCAAAACATCACCGTC
AGAGTGAGCCTCGCAGCCTCTCTCGTGGGGAACATTGATTCCACCGATGA
TCAGAGGGTAGCCAGGCTCCAATCTATGAAGATCAAACCCGTGGCCCACA
CGAAAAGGCAGTGATTTTGATTTGGACGGTTGGATCGAAGCCGATGACTC
TTTAACTTCGATGGAAGAAGTGGCTGCGGCTGAAACTGAAATACGAGGCA
GCGACGTTGACTGTGTTGTGCGGAGATGTTTGGCGGTTAAGCTACGAGGC
TTCAAACTCAACAGAGGAGGACATAGTGGCTTATTCGTAATTTTCCTG
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