CF836668

Overview
NameCF836668
Unique NameCF836668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836668_ssr378 microsatellite CF836668_ssr378:378..387. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1190 contig Csv1_Contig1190:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.239e-92
Identity = 175/222 (78.83%), Postives = 192/222 (86.49%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            AST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLALTVLIGAAA+GSKVSPADAAYGE++NVFG+PK+NTD+LPY+GDGFKLSIPSKWNPSKEREF GQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGGFDPDAVATANILEA+        YYF+SVLTRTADGDE GKHQ
Sbjct:    2 ASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQ 222          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 6.754e-90
Identity = 170/226 (75.22%), Postives = 193/226 (85.40%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLH HALS++ ART+SS   QR+VS++KP Q+VCRAQKQ+  QEDDG++V  SRRLALTVLIGAAA+GSKVSPADAAYGE++NVFG+PK NTDFL YNGDGFKL +P+KWNPSKE EF GQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT SEGGF+  AVATAN+LE S        YY LSVLTRTADGDE GKHQ
Sbjct:    2 ASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSRRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQ 227          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 325.865 bits (834), Expect = 1.274e-88
Identity = 163/223 (73.09%), Postives = 194/223 (87.00%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            A + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLALT+L+GAAAVGSKVSPADAAYGE++NVFG+PKTNTDFLPYNGDGFK+ +P+KWNPSKE E+ GQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE+S +     PYY+LSVLTRTADGDE GKHQ
Sbjct:    2 AYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQ 222          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.840e-88
Identity = 166/221 (75.11%), Postives = 185/221 (83.71%), Query Frame = 1
Query:   40 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+LIG AA+GSKVSPADAAYGE++NVFG+PK NTDFLPYNGDGFKL IP+KWNPSKE EF GQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVATAN+LEAS        YY+LSVLTRTADGDE GKHQ
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQ 219          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.192e-86
Identity = 167/223 (74.89%), Postives = 186/223 (83.41%), Query Frame = 1
Query:   40 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLALT+LIG AA+GSKVSPADAAYGE++NVFG+PK NTDFLPYNGDGFKL +P+KWNPSKE E+ GQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVAT N+LEAS        YY+LSVLTRTADGDE GKHQ
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQ 217          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.468e-86
Identity = 164/224 (73.21%), Postives = 188/224 (83.93%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ+  ++D     +VSRRLALTVLIGAAAVGSKVSPADAAYGE++NVFG+PKT+TDF  YNGDGFKL IPSKWNP+KE E+ GQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+E GKHQ
Sbjct:    2 ASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQ 224          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.541e-85
Identity = 160/225 (71.11%), Postives = 188/225 (83.56%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDESGKHQ 687
            AST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRRLALTVLIGAAAVGSKVSPADAAYGE++NVFG+PK NT+F+PYNGDGFKL +PSKWNPSKE+EF GQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S        YY ++VLTRTADGDE GKHQ
Sbjct:    2 ASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQ 226          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.541e-85
Identity = 163/220 (74.09%), Postives = 180/220 (81.82%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+VLIGAAAVGSKVSPADAAYGE++NVFG+ KTNTD+LPYNGDGFKL +P+KWNPSKEREF GQVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD +AVA ANILE+S        YY +SVLTRTADGDE GKHQ
Sbjct:    2 ASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQ 218          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.104e-83
Identity = 159/222 (71.62%), Postives = 182/222 (81.98%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSSQRH--VSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDESGKH 684
            AS+ CFL HHA ST PA TS +  H  V  IKP+Q++CRAQK +   E+  +AVSRRLALT+LIG+AAVG+K++PA+AAYGE++NVFG+ KTNTDFLPY GDGF L IP+KWNPSKE EF GQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGFDPD+VATANILE S        YY +SVLTRTADGDE GKH
Sbjct:    2 ASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKH 222          
BLAST of CF836668 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.122e-83
Identity = 161/225 (71.56%), Postives = 186/225 (82.67%), Query Frame = 1
Query:   40 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQ-KQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESSNVFGRPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFRGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDESGKHQ 687
            ASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ KQ+  + D     +VSRRLALT+LIGAAAVGSKVSPADAAYGE++NVFG+PKT+TDF  YNGDGFKL IPSKWNP+KE E+ GQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+LS+LTRTADG+E GKHQ
Sbjct:    2 ASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQ 225          
The following BLAST results are available for this feature:
BLAST of CF836668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA3.239e-9278.83Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC6.754e-9075.22Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP1_ARATH1.274e-8873.09Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLTU4.840e-8875.11Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.192e-8674.89Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC3.468e-8673.21Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SPIOL6.541e-8571.11Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA6.541e-8574.09Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG2.104e-8371.62Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC6.122e-8371.56Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03F24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836668 ID=CF836668; Name=CF836668; organism=Citrus sinensis; type=EST; length=688bp
AAATAAAAAATGAAGAGGAGAGAGCGAAAAGAAAAAATGGCGTCAACTCA
ATGCTTCTTGCACCACCATGCACTCTCTACTACACCAGCAAGAACATCAT
CATCTCAGCGCCACGTGTCGAACATCAAGCCCACCCAGATTGTCTGCCGT
GCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCG
TTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCT
CTCCTGCCGACGCTGCCTACGGTGAATCATCCAATGTGTTTGGTAGGCCA
AAGACCAACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGTC
CATTCCCTCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCGGGGTCAGG
TTCTTAGATACGAAGACAACTTCGATTCCAACAGCAATGTCTCCGTCATA
ATCACCCCAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGGA
ATTCCTCAGTAAGGTGGACTACTTGCTGGGAAAACAAGCCTATTCCGGCA
AAACTTCGTCTGAGGGTGGTTTCGACCCTGATGCTGTGGCAACAGCTAAC
ATCTTGGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCTGTATTAAC
AAGAACTGCTGATGGAGATGAAAGTGGCAAGCATCAAC
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