CF836680

Overview
NameCF836680
Unique NameCF836680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:422..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.971e-36
Identity = 78/132 (59.09%), Postives = 95/132 (71.97%), Query Frame = -3
Query:  419 PAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 814
            P +TRVNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  113 PVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = -3
Query:  410 PAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 814
            P  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:  104 PRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   88 KVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   88 KVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V ++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                   L            DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V ++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   88 KVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V ++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   88 KVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = -3
Query:  431 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 802
            +V +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L           +DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = -3
Query:  425 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 802
            +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CF836680 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = -3
Query:  425 RVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 802
            +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of CF836680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_IPOBA1.971e-3659.09ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH6.788e-2949.63ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB4.723e-1433.87ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN2.344e-1333.06ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE1.163e-1230.65ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_MOUSE1.163e-1233.06ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT1.984e-1231.45ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_BOVIN4.421e-1230.65ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_CALJA7.540e-1230.16ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_CALMO9.848e-1229.37ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03G07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836680 ID=CF836680; Name=CF836680; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTTTTTTTTTTGCCTTAAGAGAGGATCAAGAGCATATATTAATA
AAATGCGAACACTGTCTTAGCAACACTATGTTCATCAAAAGAGCTTTTGT
CCTTAAGAACCGTATCATGTGCAGGACCGAGTAATTATTTGAACACACAA
ATTATACCCTTAAAAGATAATGGTCCGAACCGAAACCCAAACAAAAAATG
TTGCCGTCCATCAGAACCATTTGCCATGAAAGCAAAGTGATCAAGATGTG
AATTTTATTTTGCCAATGATTCAATTCATTCAGAAATGGCGGAGCACAAG
CAAACAGCACCAAACAAAAGCATGAATGGTTCTTTTACTTCTTGGAGCGT
TCCAGTTGTTGCATAATCATCTTGAAAATTTGGGCCCTGGGGCTGTGGCA
GCCTTTTTAGAGGGTGCCAAAATGAATGGGCTCACGTAGGAACCTCTCCA
TCTGCCGCGCCCTAGACTTAATGGACATGTCAAACACCTTTTGCCCAAAC
TCTACTACGAGCCCACCAAGAATGCTAGGATCAACCTTCTGTTCAACCTT
GACTTTCTTCCCTTGGCCAAGTGTCTCTTGCAGTGTCTCTTTCAACTCTT
TCTCTTCTTCTGGGGGAAGTGGAATAACGGATGTAACAGTAACTTTTACT
TCGCCCTTGTGTGCCATGGTTAACTCCACAAACCTCTTAGCGATGGTGTC
TAAGTTTCTAAGCCTCCCATTCTCAGCCAAAACAACCAAGAAGTGCTTCG
TAACATCTGAAAATTTAGCCTGAGTACAGATTTCGTTAATGGCATTAACT
CTCGTCTCTGCAGGCA
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