CF836681

Overview
NameCF836681
Unique NameCF836681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11338 contig Csv1_Contig11338:706..1428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_CLOAB (Thiamine-phosphate pyrophosphorylase OS=Clostridium acetobutylicum GN=thiE PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKANNLTVGLD 718
            D  LY VTD  + K+  R +  +++ A++GG T++QLREK+  T  F E+A    +I   + +PL+INDRIDIALA +ADGVH+GQSDMP   AR LLG DKIIGVS  + EEA +A  +GA Y+G G +Y T+TK +   V L+
Sbjct:    5 DYKLYLVTDRKVLKE--RDLYKSIEEAIKGGVTLVQLREKEMSTLDFYESALKLKKITETYKIPLIINDRIDIALAINADGVHIGQSDMPLIKARELLGKDKIIGVSAHSIEEALEAERNGATYLGVGAIYNTSTKGDAQAVSLE 147          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_METS3 (Thiamine-phosphate pyrophosphorylase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=thiE PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.712e-30
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  275 NPSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKANNLTV 709
            N  DL LY VT++  +++      + ++ +L+GG +++QLREK A+T  F   A    +I   + VPL+INDRIDIALA DADGVH+GQSDMPA++AR+++G DKI+GVS    +EA +A  + A+YIG G VY TNTK +  +V
Sbjct:    2 NNLDLSLYLVTNNSEDEE---KFLNIIEESLKGGVSVVQLREKKAETLDFYNLALKVKEITQKYNVPLIINDRIDIALAIDADGVHVGQSDMPAKTARSMIGEDKILGVSAANIKEAKKAQRESADYIGVGAVYPTNTKDDATSV 143          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_CLONN (Thiamine-phosphate pyrophosphorylase OS=Clostridium novyi (strain NT) GN=thiE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 71/144 (49.31%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  293 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKAN-NLTVGLDG 721
            LY +TD       GRS+ + V+ A++GGAT++Q+REK+  TR F   A+   ++   + VPLLINDRIDIALA +ADGVHLGQSDMP   AR +LG DK+IG+S    +EA +A   GA+Y+G G V+ T TK + +  +GL G
Sbjct:    7 LYLITDRSFLN--GRSLAECVEDAIKGGATLVQVREKNISTRDFYNIAREVQEVTTKYNVPLLINDRIDIALAINADGVHLGQSDMPIELARKILGDDKVIGISAGNVKEAIEAEKAGADYVGLGTVFFTGTKKDIDEPIGLAG 148          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_CHLAA (Thiamine-phosphate pyrophosphorylase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=thiE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 72/147 (48.98%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKANNLT-VGLDG 721
            D  LY VTD+G+++  GRS    ++AA+ GGAT++Q REK A TR  +E A     +    GVPL++NDR+D+ALA DADGVH+GQ DMP   AR L+G +K++GVS     EA QA  DGA+Y+G G ++ T TK +    +GLDG
Sbjct:    8 DWRLYVVTDAGLSR--GRSHRAVIEAAIVGGATVVQYREKHASTRQMIEEALELRDLTRRAGVPLIVNDRVDVALAVDADGVHVGQDDMPVALARRLIG-NKLLGVSAHNLSEALQAVRDGADYLGVGPIFATTTKPDAAAPIGLDG 151          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_THETN (Thiamine-phosphate pyrophosphorylase OS=Thermoanaerobacter tengcongensis GN=thiE PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKANNLTVGLDG 721
            D  LYA+TD    K  G  I +AV+ A++ G T++QLREKD  +R F E A    ++   + VPL+INDR+DIALA DA+GVH+G  D+P    R +LGPDKI+G S  + EEA +A  +GA+YIG G V+    K     +G++G
Sbjct:    5 DFTLYAITDRSFIK--GMDIAEAVEIAIKNGVTVVQLREKDISSREFYEIALKVKEVTRKYNVPLIINDRVDIALAVDAEGVHVGPDDLPVGVVRRILGPDKIVGGSAYSVEEALKAEKEGADYIGAGSVFAQPVKPEAEVIGIEG 148          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THI4_SCHPO (Probable thiamine biosynthetic bifunctional enzyme OS=Schizosaccharomyces pombe GN=thi4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTK-ANNLTVGLDG 721
            D  LY VT S +    G +I   V+  + GG T++Q REKD  T+ F+E AK   +IC  + VP LINDRID+ALA  ADGVH+GQ DM    AR +LG D IIGVS    EE  +A  DGA+Y+G G +Y TNTK   +  +G+ G
Sbjct:    6 DYSLYLVTSSSLIAP-GSTIERQVEEGILGGVTLVQHREKDISTKCFVERAKRLSEICKKYDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKILGDDAIIGVSTNNIEEIEKAAADGADYVGIGSIYETNTKDVKDRLIGITG 151          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_ALKOO (Thiamine-phosphate pyrophosphorylase OS=Alkaliphilus oremlandii (strain OhILAs) GN=thiE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKANNLTVGLD 718
            D  LY V+D  + K  GR    +++ A+ GGATI+QLREK+A +  F + A     +   + VPL+INDR+DIALA DADGVH+GQSD+PA   R+++G +KI+GVS  T EE+ +A  DGA+YIG G ++ T TK +   V LD
Sbjct:    8 DYGLYLVSDRDVLK--GRDFIKSLEEAILGGATIVQLREKEASSLEFYQLALKAKALTEKYNVPLIINDRVDIALAVDADGVHVGQSDLPAHIVRSMIGQNKILGVSTATLEESKKAAEDGADYIGVGALFPTGTKTDANPVTLD 150          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_MOOTA (Thiamine-phosphate pyrophosphorylase OS=Moorella thermoacetica (strain ATCC 39073) GN=thiE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.228e-29
Identity = 67/147 (45.58%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKAN-NLTVGLDG 721
            DL++   T  G     GR   + V+ AL GGAT IQLREK+   R  +E  +A  ++    G   ++NDR+DIALA +ADG+H+GQ D+PA  AR LLGP+KI+GVS  T +EA QA +DGA+Y+G G ++ T +K +    +GL+G
Sbjct:    5 DLYVVITTKLG----GGRPTLELVRGALAGGATAIQLREKELPARELVELGRAIRELTRDAGATFIVNDRLDIALAVEADGLHIGQEDLPAPVARKLLGPEKILGVSAGTTDEARQAEVDGADYLGVGSIFATGSKGDAGSPIGLEG 147          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_XANP2 (Thiamine-phosphate pyrophosphorylase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=thiE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 67/140 (47.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  278 PSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKAN 697
            P DL LY VTD  +     R +   V AA++GGATI+QLR+ DA  R  +E A+A   +    G+PL+INDR+D+A+A DADGVHLGQ DM    ARA+LGP +I+G+S   P E   + + G +Y+G G V  T TKA+
Sbjct:    4 PFDLTLYLVTDPRLVA--ARGLLTTVDAAVKGGATIVQLRDPDAHGRALVEQARALKALLAPLGIPLIINDRVDVAVAADADGVHLGQDDMTPADARAVLGPQRILGLSVGNPAEYAASDLSGVDYLGVGPVKATGTKAD 141          
BLAST of CF836681 vs. ExPASy Swiss-Prot
Match: THIE_SYNWW (Thiamine-phosphate pyrophosphorylase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=thiE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 2
Query:  281 SDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYRTNTKAN 697
            SD  LY VTD  + +  GRS+ + V+ A++GG +++QLREK+A +R F E A+         GVPLLINDR+DIALA DADG+HLGQ D+P   AR+LLG +KIIG+S    EEA +    GA+Y+G   V+ T TKA+
Sbjct:    4 SDYSLYLVTDRSLLQ--GRSLLEEVRKAVKGGVSMVQLREKEAGSREFYELAQTLQTELRELGVPLLINDRLDIALAVDADGLHLGQDDLPLPVARSLLGKEKIIGLSINKREEAREGEKMGADYLGVSPVFSTPTKAD 140          
The following BLAST results are available for this feature:
BLAST of CF836681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
THIE_CLOAB7.683e-3149.66Thiamine-phosphate pyrophosphorylase OS=Clostridiu... [more]
THIE_METS31.712e-3048.28Thiamine-phosphate pyrophosphorylase OS=Methanobre... [more]
THIE_CLONN2.920e-3049.31Thiamine-phosphate pyrophosphorylase OS=Clostridiu... [more]
THIE_CHLAA3.813e-3048.98Thiamine-phosphate pyrophosphorylase OS=Chloroflex... [more]
THIE_THETN1.109e-2945.89Thiamine-phosphate pyrophosphorylase OS=Thermoanae... [more]
THI4_SCHPO1.449e-2948.30Probable thiamine biosynthetic bifunctional enzyme... [more]
THIE_ALKOO2.472e-2948.28Thiamine-phosphate pyrophosphorylase OS=Alkaliphil... [more]
THIE_MOOTA3.228e-2945.58Thiamine-phosphate pyrophosphorylase OS=Moorella t... [more]
THIE_XANP27.191e-2947.86Thiamine-phosphate pyrophosphorylase OS=Xanthobact... [more]
THIE_SYNWW9.392e-2950.36Thiamine-phosphate pyrophosphorylase OS=Syntrophom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03G07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836681 ID=CF836681; Name=CF836681; organism=Citrus sinensis; type=EST; length=723bp
TTTCTTTGATGGCGATGACTTCCACGAGCTGCGTTCTTCTCGTGTAAACA
CTCGTAACACTCATGGTACTGGTTGCACTTTGGCGTCGTGTATAGCAGCT
GAGCTAGCAAAAGGTTCTCCAATGCTATCAGCTGTTAAGGTGGCTAAATG
TTTCGTTGAAACAGCCTTGGATTACAGCAAAGACATTGTAATTGGAAGTG
GGCCTCAAGGGCCCTTTGACCACCTGCTGAGACTTAAAAGTACTTCTCGC
CAGTCTCATAGAGCGGAGGCATTCAATCCAAGTGACCTATTTTTGTATGC
TGTCACAGATTCAGGGATGAACAAGAAGTGGGGCCGTTCTATAACGGATG
CAGTTAAAGCTGCCTTAGAAGGAGGTGCTACCATTATTCAATTAAGAGAG
AAAGATGCTGACACAAGGGGCTTTCTCGAAGCAGCGAAAGCATGTCTTCA
AATTTGTTGTGTCCATGGAGTACCTCTGCTGATTAATGACCGCATCGATA
TTGCCCTCGCTTGTGATGCTGATGGTGTGCATCTAGGTCAGTCTGACATG
CCTGCTCGTAGTGCCCGTGCTCTTCTTGGTCCTGATAAGATCATTGGCGT
ATCGTGCAAAACACCTGAAGAAGCCCATCAAGCTTGGATTGATGGTGCCA
ATTACATTGGTTGTGGTGGAGTATATCGAACTAACACAAAGGCAAATAAT
CTCACTGTCGGTTTGGATGGATT
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