CF836684

Overview
NameCF836684
Unique NameCF836684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1398 contig Csv1_Contig1398:52..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.000e-61
Identity = 117/135 (86.67%), Postives = 122/135 (90.37%), Query Frame = 3
Query:    6 MVHIKKPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            MV   KPNKAVILLQG YAG+KAVIVK+FDDGTRE+ YGHCLVAGIKK+P KVI+KDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK L ERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.490e-58
Identity = 110/135 (81.48%), Postives = 119/135 (88.15%), Query Frame = 3
Query:    6 MVHIKKPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            MV   K NKAVILLQG YAG+KAVI+KSFDDG R+R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+LQSKDKKV A KE K +L ERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.490e-58
Identity = 110/135 (81.48%), Postives = 120/135 (88.89%), Query Frame = 3
Query:    6 MVHIKKPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            MV   K NKAVILLQG YAG+KAVI+KSFDDGT +R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+L+SKDKKVTA KE K +L ERFKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.010e-57
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 3
Query:    6 MVHIKKPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            MV   KP KAVILLQG Y G+KAVIVKSFDDGT E+ YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VVSAD++ SKDKKVTA KE K +  ERFKTGKNRWFFTKLRF
Sbjct:    1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 106/134 (79.10%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   21 KPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL----KDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            KPNKAVILLQG YAGRKAVIV++FD+GTR+R YGHCLVAGI +YP KVIRKDSAKK  KKSRVKAF+KLVNY H+MPTRYTLD DL    KDVV+AD LQ++DKKVTA + TK RL ERFKTGKNRWFFTKLRF
Sbjct:    6 KPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 83/135 (61.48%), Postives = 101/135 (74.81%), Query Frame = 3
Query:    6 MVHIKKPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            MV   K  K V++L G +AG+KAVIV++FDDGT  R YGH LV G++K P KV ++ S KK AKKS +K F+K VNY HLMPTRYTLDVD K  V+A++ ++  KKV A KE KK L E+FKTGKNRWFFTKLRF
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 3
Query:   21 KPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            KP K V++L G YAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K +  ER+KTGKN+WFF KLRF
Sbjct:    6 KPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 3
Query:   21 KPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            KP K V++L G YAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K +  ER+KTGKN+WFF KLRF
Sbjct:    6 KPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = 3
Query:   21 KPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            KP K V++L G YAGRKAVIVK+ DDGT +R Y H LV+GI +YP KV      KK AK+S++KAFVK+ NY HLMPTRY++D+ L K +V+ D  +    K  A +E K +  ER+KTGKN+WFF KLRF
Sbjct:    6 KPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF836684 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = 3
Query:   21 KPNKAVILLQGPYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRL*ERFKTGKNRWFFTKLRF 410
            KP K V++L G Y+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K +  ER+KTGKN+WFF KLRF
Sbjct:    6 KPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
The following BLAST results are available for this feature:
BLAST of CF836684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA7.000e-6186.6760S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH2.490e-5881.4860S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH2.490e-5881.4860S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH8.010e-5779.2660S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.414e-5379.1060S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST1.793e-4061.4860S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM1.736e-3557.2560S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE2.268e-3557.2560S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU5.052e-3555.7360S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT8.617e-3555.7360S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03G09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836684 ID=CF836684; Name=CF836684; organism=Citrus sinensis; type=EST; length=620bp
TTGAAATGGTGCACATAAAGAAACCAAACAAGGCCGTGATCCTTCTTCAG
GGCCCTTACGCCGGCCGGAAGGCGGTGATCGTGAAGTCGTTCGACGACGG
GACCCGCGAGAGGGCGTACGGGCACTGTTTGGTAGCGGGGATAAAGAAGT
ACCCGGGCAAGGTCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAG
TCACGCGTCAAGGCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATGCC
CACGCGCTACACTCTCGACGTCGATTTGAAGGACGTCGTGTCGGCCGATT
CCCTCCAGAGCAAGGACAAGAAGGTGACCGCTTGCAAGGAGACCAAGAAG
CGCCTCTAGGAGAGGTTTAAGACTGGCAAGAATCGTTGGTTCTTTACTAA
GCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTGTTTTTG
TTTTGTTTTATTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGAA
TTTTGAGATTTATGTAGTTTTTTGTGAACTTAATTTTATTTCTGGATCTG
GTACTATTTTTATGTGATAATATTGGGTTTATAATGTTTACTCAAGACGT
CATAAATTAATGCTGCTTGC
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