CF836686

Overview
NameCF836686
Unique NameCF836686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836686 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 67/175 (38.29%), Postives = 106/175 (60.57%), Query Frame = 2 
Query:   29 DIDRWILYMSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKVM 553
            DID+W+L++SR+ +KE +L++ +G+ ++VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  I ++ +V E+LIS  P LE L+L  FD    L+I APNL +  + G F D+  ENT  L  +S+ +Y++ ++       +   L++F   +P + +L    YF K +
Sbjct:   98 DIDQWLLFLSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH-EDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYL 269
The following BLAST results are available for this feature:
BLAST of CF836686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FDL1_ARATH7.372e-2738.29F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03G10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836686 ID=CF836686; Name=CF836686; organism=Citrus sinensis; type=EST; length=758bp
CTCTCACCGAGATCTTCTAGGTGTCAGTGATATTGATAGATGGATTCTTT
ATATGTCAAGAAGCTGTGTCAAAGAATTCATACTTGAGATCTGGAAGGGA
CAGCGCTATAAGGTTCCTTCTAGTTTATTCTTGTGCCAAAATTTGATTCA
TCTGGAGCTATTTAATTGTTTGTTGAAGCCGCCATCAACATTCAAAGGCT
TCAGGAATTTGAAAAGTCTCGATCTACAACACATTACCCTGTCCCAGGAT
GTGTTTGAAAATTTAATTTCAAGCAGCCCTACGCTTGAGAGGTTGACATT
GATGAATTTTGATGGTTTCACCCATCTTAATATTGATGCACCTAATCTCC
AATTTTTTGATATTGGAGGAGTTTTTGATGATGTTACCTTCGAGAACACC
TTCCATTTAGCTTTGGTTTCCATTGGCTTGTACGTAAATGTCAAAAATGA
TCAGGCCATGGGTCCTGGAAATTCTTGTAAATTGCTAAGATTCTTTGTTC
ATCTTCCTCACATTCGAAGGCTTGAGATTCAGAGTTATTTTCTAAAGGTA
ATGTTTTCTATTTTATGCCATTAACTTTTACTTTTGAAGTTAAATATCGA
TTCCTTTGTGCTGTCCATATGCCATCTTTAGTGCATATTATCTGAGATAG
TAATTTTTTCCTTGGGTTCAATGTCTTCTGTTTGCTCCAGTATTTGGCTA
TTGGCAACGTGCCAAGCAGGTTGCCTCGTCCATGTGTTGATCTGAATTAT
CTTTCTAT
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