CF836687

Overview
NameCF836687
Unique NameCF836687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836687_ssr83 microsatellite CF836687_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13796 contig Csv1_Contig13796:650..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.701e-67
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = -3
Query:  372 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 767
            VGRTHCVKLVHRLYPEVDP+LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  199 VGRTHCVKLVHRLYPEVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.017e-41
Identity = 75/129 (58.14%), Postives = 95/129 (73.64%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            VGR HCV LVHRLYP +DP L+P +  ++  +CP   PDP AV Y RNDR TPMV+DN YY+NI+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  199 VGRVHCVNLVHRLYPTIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.229e-17
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G  HC     RLYP  DP +N      +   CP A      V    ND  +P V DN YY ++++ +GL   D  L  DKRTR  V+  A  Q  FF  F+ A+  + + + LTGT+GEIR  C+  N
Sbjct:  215 IGIAHCPSFTDRLYPNQDPTMNQFFANSLKRTCPTANSSNTQV----NDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.574e-16
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G +HC +  +R+ P      NP     +   C ++  DP    +  ND  TP   DN Y++NI    GL+  DH L +D RTRP+V+  A+ Q  FF +F+ A+  LS +  LTG +GEIR+ C+  N
Sbjct:  202 IGFSHCKEFTNRVNPNNSTGYNPRFAVALKKACSNSKNDPTISVF--NDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.924e-14
Identity = 47/134 (35.07%), Postives = 65/134 (48.51%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G  HC K+ +RLY       VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  199 LGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNI-DPRVA--INMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFTDSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.513e-14
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G +HC + V R+    +   NP     +   C +   DP    +  ND  TP   DN YY+N+    GL+  DH L +D RTR +V   AK+QD FFK+F++A+  LS     TG +GEIR+ C+  N
Sbjct:  191 IGFSHCKEFVGRVGRN-NTGYNPRFAVALKKACANYPKDPTISVF--NDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G  HC K+ +R+Y      +VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD+R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  199 LGFAHCTKVFNRIYTFNKTTKVDPTVNKDYVTELKASCPRNI-DPRVA--INMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFTDRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G  HC K+  R+Y       +DP++N  +V  +   CP  +    A+     D  +P   DN Y++N+   KGL   D  L TD+R+R  V   A S+  F + F  AIT L     LTG  GEIR+ C+  N
Sbjct:  195 IGFAHCGKMSKRIYNFSPTTRIDPSINRGYVVQLKQMCPIGVDVRIAINM---DPTSPRTFDNAYFKNLQQGKGLFTSDQILFTDQRSRSTVNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = -3
Query:  372 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 767
            +G +HC +  +R++P+VDP LN      +   C +   +     ++  D  TP   DN Y++N+    GL+  DH L  D  TRP+V+  A +Q  FF++F+RA+  L          GE+R+ C+  NKL+
Sbjct:  196 IGFSHCKEFSNRIFPKVDPELNAKFAGVLKDLCKNFETNKTMAAFL--DPVTPGKFDNMYFKNLKRGLGLLASDHILFKDPSTRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFNKLN 325          
BLAST of CF836687 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.550e-14
Identity = 43/133 (32.33%), Postives = 68/133 (51.13%), Query Frame = -3
Query:  381 VGRTHCVKLVHRLYPEVDP----ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 767
            +G +HC +   R++ + D      +NP +   +   C +   D +   +  ND  TP   DN YY+N+    GL+  DH +A D RTR  V   A+ +  FF  F++A+  +SE N  TG  GE+R+ C+  N
Sbjct:  192 IGFSHCKEFASRIFNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAF--NDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
The following BLAST results are available for this feature:
BLAST of CF836687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PER42_ARATH5.701e-6789.39Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH7.017e-4158.14Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER12_ARATH9.229e-1737.21Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER63_ARATH1.574e-1636.43Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER51_ARATH1.924e-1435.07Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER31_ARATH2.513e-1437.21Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER50_ARATH3.282e-1434.33Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER45_ARATH3.282e-1434.33Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER41_ARATH5.599e-1432.58Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER6_ARATH9.550e-1432.33Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836687 ID=CF836687; Name=CF836687; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTTTTTTTATTGCCATTGGCATGAATCATCAATTCCCTTCAT
TATACAAATCCATGCACCATACACCATCCCTGCATACATACATACATCCC
TCATCTACCACTGCCATTACTGAATATTAATAACATCAAGCTCACACCAT
CGAGGAAAAGGAAAGCCTAGGCTTAAACATTGGACGGTACATCTAAGGAA
CATAATAGCAGTAATACGAACATCTCACAGGAAACAAACCGATCTAGAAA
AACCATCTTATTGGGAGCTCATCTCACACTCTTTTCTTCCTCATAGAAGA
AACAAGGAAGAAAAATTTGGAGCTATTAACTTGTTGTAGCTAATACAGCT
GTTAGCTAGCTAGGACTTGTCGTGGAGCTTGTTGGCAAGATTGCAAACCT
TTCGGATCTCACCCTTTGTACCTGTGAGAGGGTTGTTCTCAGAAAGGAGA
GTAATGGCTCTTGAAAATTCCTTGAAGAAGTAGTCTTGACTCTTGGCCAT
CTTCTTAACATAAGGTCTTGTCCTCTTGTCGGTGGCTAGCTGATGATCAA
CCATCATCAAGCCCTTGTTGTCCAATATGTTCCTATAGTAGTTGTTGTCC
AGCACCATGGGTGTGCCACGGTCATTCCTCACATACTGAACAGCCTTGGG
GTCTGGGATTGCATCAGGACACTTATGGAGCATATGCGGAACATGGTCAG
GGTTCAGTGCAGGGTCAACTTCTGGGTACAGACGGTGCACCAGCTTCACA
CAATGAGTTCTGCCAACAC
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