CF836691

Overview
NameCF836691
Unique NameCF836691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:293..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.156e-98
Identity = 162/211 (76.78%), Postives = 180/211 (85.31%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACV----WXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            MQ+KLV GNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFT GKGDREQQF LWFDPT+DFHTYS+LWNPQRI+F VDG+PIREFKN+ES G LFPKNQPMR+YSSLWNA++WATRGGL+KTDW++APFTASYR FN  ACV                   W SQELD+TGQE+++WVQ NYMIYNYC D+KRFPQGLP+EC
Sbjct:   73 MQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 283          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.221e-95
Identity = 156/212 (73.58%), Postives = 178/212 (83.96%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVW-----XXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            MQ+KLVPGNSAGTVT  YLKSPG+TWDEIDFEFLGN SG+PYTLHTNV+T GKGD+EQQF LWFDPTA+FHTY++LWNPQRI+F VDG+PIREFKN+ES G LFPKN+PMR+YSSLWNADDWATRGGL+KTDW++APFTASYR F   ACVW                   W SQELD+T Q+R++WVQ+NYMIYNYC D+KRFPQGLPKEC
Sbjct:   70 MQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 1.946e-91
Identity = 151/207 (72.95%), Postives = 174/207 (84.06%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            MQ+KLVPGNSAGTVT +YLKS GSTWDEIDFEFLGN+SGDPYTLHTNV+T GKGD+EQQFHLWFDPTA+FHTYS+LWNPQRI+  VD +PIREFKN ES GVLFPKN+PMR+Y+SLWNADDWATRGGL+KTDW++APF ASYRN   ++               + W++QE+D+T Q RLKWVQKNYMIYNYC D +RFPQG PKEC
Sbjct:   71 MQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKIDS------------KPNSNWYTQEMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKEC 265          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.319e-91
Identity = 152/207 (73.43%), Postives = 171/207 (82.61%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            MQLKLVPGNSAGTVTAYYLKS G TWDEIDFEFLGNL+GDPYT+HTNV+T GKGDREQQFHLWFDPTADFHTYSVLWNP  IVF VD  P+REFKNL+  G+ +PK QPMR+YSSLWNAD WATRGGL+KTDW++APFTASYRNF A+ACV               WFSQ LD T +++++ VQ+ YMIYNYC D+KRFPQG PKEC
Sbjct:   77 MQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACV-SSGGRSSCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 282          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.486e-88
Identity = 141/208 (67.79%), Postives = 169/208 (81.25%), Query Frame = -2
Query:  143 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECA 766
            +Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GD+EQQFHLWFDPT DFHTY ++WNPQR++F +DG PIREFKN E+ GV FPK+QPMR+Y+SLW A+ WATRGGL KTDW++APFTA YRN+N +ACVW            + WF+Q LD  G+ R+KW Q+ YM+YNYC D KRFPQG P EC+
Sbjct:   77 VQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACVW--SNGKSSCSANSSWFTQVLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPECS 282          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.443e-86
Identity = 141/208 (67.79%), Postives = 166/208 (79.81%), Query Frame = -2
Query:  143 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECA 766
            +Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GD+EQQFHLWFDPTA+FHTY + WNPQRI+F VDG PIREF N ES GV FP  QPMR+Y+SLW A+ WATRGGL KTDW++APFTA YRN+N   CVW            + WF+Q+LD+ GQ R+K VQ  YM+YNYC D KRFP+G+P EC+
Sbjct:   72 VQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVW--VNGKSVCPANSQWFTQKLDSNGQTRMKGVQSKYMVYNYCSDKKRFPRGVPPECS 277          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.461e-86
Identity = 141/207 (68.12%), Postives = 167/207 (80.68%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            +Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GD+EQQFHLWFDPT +FHTY + WNPQRI+F VDG PIREFKN E+ GV FP  QPMR+Y+SLW A+ WATRGGL KTDW++APFTA YRN+N + CVW            +PWF+Q+LD+ GQ R+K VQ  YMIYNYC D +RFP+G+P EC
Sbjct:   77 VQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGCVW--ANGKSSCSANSPWFTQKLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAEC 281          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.215e-86
Identity = 141/208 (67.79%), Postives = 166/208 (79.81%), Query Frame = -2
Query:  143 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECA 766
            +Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGNLSG PYTLHTNV+T G GD+EQQFHLWFDPT +FHTY + WNPQRI+F VDG PIREFKN ES GV FP  QPMR+Y+SLW A+ WATRGGL KTDW++APFTA YRN+N   CVW            + WF+Q+LD+ GQ R+K VQ  YM+YNYC D +RFP+G+P EC+
Sbjct:   77 VQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVW--ANGKSSCPANSSWFTQQLDSNGQTRMKGVQSKYMVYNYCNDKRRFPRGVPVECS 282          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.721e-85
Identity = 144/222 (64.86%), Postives = 170/222 (76.58%), Query Frame = -2
Query:  146 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNA-NACVWXXXXXXXXXXXXNP-------------WFSQE-LDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 766
            MQ+KLVPGNSAGTVT +YLKS G TWDEIDFEFLGN+SGDPY +HTNV+T GKGDREQQF+LWFDPTA FH YS+LWNP  IVFY+DG PIREFKNLE  GV +PKNQPMR+Y SLWNADDWATRGGL+KT+W+Q PF AS+ N+N+ NACVW            +P             WFSQ  +D++ ++ L+WVQ+ +M+YNYCKD KRF  GLP EC
Sbjct:   75 MQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDSTSSSSSSTSEWFSQRGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVEC 296          
BLAST of CF836691 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.804e-82
Identity = 142/215 (66.05%), Postives = 164/215 (76.28%), Query Frame = -2
Query:  137 MQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC-----VWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECAFN 766
            M++KLVPGNSAGTVTAYYL S G TWDEIDFEFLGN++G PY +HTNVFT GKG+RE QF+LWFDPTADFHTY+VLWNP  I+F VDG PIR FKN E+NGV +PK+QPM+IYSSLW ADDWAT+GG +KTDWT APF+ASYR+FN   C     +W            N W    L++    +LKWVQK+YMIYNYC D KRFPQGLP EC  N
Sbjct:   74 MKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDCCSRTSIW---NWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTECNLN 285          
The following BLAST results are available for this feature:
BLAST of CF836691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
XTH23_ARATH8.156e-9876.78Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH2.221e-9573.58Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH1.946e-9172.95Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH3.319e-9173.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH4.486e-8867.79Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH19_ARATH1.443e-8667.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH2.461e-8668.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH3.215e-8667.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH2.721e-8564.86Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH4.804e-8266.05Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03G13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836691 ID=CF836691; Name=CF836691; organism=Citrus sinensis; type=EST; length=767bp
ATAGTACAAAAAAGAATGAACCATACATTTTATTTCGTCACTAAACATTA
GTGCACAGAATAAAAGAACCAAAACATCAAAACTGAAGATTAAAAAAGCT
ATAAACAAAGACATATGGCAAATGGATCAGTTATATATTGAATGCACATT
CTTTTGGGAGCCCTTGGGGAAATCGTTTTGAGTCCTTGCAATAATTATAT
ATCATGTAATTCTTCTGCACCCATTTGAGTCTCTCTTGGCCAGTGGCATC
AAGTTCTTGCGAGAACCATGGATTATTATTTTTTGAGTTGCAAGAGGATT
TTCCATTAGACCAGACGCAAGCATTGGCATTGAAGTTTCTGTAAGAAGCA
GTGAAGGGAGCTTGGGTCCAGTCAGTTTTGATAAGGCCACCTCTCGTGGC
CCAGTCATCGGCGTTCCAGAGACTCGAGTAAATCCTCATCGGCTGGTTTT
TGGGAAAGAGTACGCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGC
GAGCCATCAACATAGAAGACAATACGTTGGGGATTCCAGAGAACGGAATA
GGTGTGAAAGTCAGCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTC
TGTCACCTTTGCCATTTGTGAACACATTAGTATGAAGAGTATAAGGATCA
CCACTTAAATTCCCCAAGAATTCGAAGTCTATCTCATCCCATGTTGATCC
TGGTGATTTTAAGTAGTAGGCGGTGACTGTGCCGGCAGAATTGCCAGGGA
CAAGCTTGAGTTGCATG
back to top