CF836725

Overview
NameCF836725
Unique NameCF836725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836725_ssr155 microsatellite CF836725_ssr155:155..166. BLAST: Citrus ESTs to Prunus persica proteins V1
CF836725_ssr662 microsatellite CF836725_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4547 contig Csv1_Contig4547:70..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.128e-97
Identity = 171/206 (83.01%), Postives = 183/206 (88.83%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGIC+KRVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            YEGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 4.621e-96
Identity = 167/206 (81.07%), Postives = 183/206 (88.83%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGICAKRVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ  YER+KQL+KLR KAEK AEE+LG QL+++AP+KY
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.109e-95
Identity = 168/206 (81.55%), Postives = 181/206 (87.86%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EG+P PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL KLR KAEK AEERLG QL+++AP+KY
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.325e-94
Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGIC+KRVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q  YER+KQL KLR KAEK AEE+LG QL+++A IKY
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.287e-92
Identity = 164/206 (79.61%), Postives = 183/206 (88.83%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGI AKRVVVDARHHMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.948e-90
Identity = 159/206 (77.18%), Postives = 182/206 (88.35%), Query Frame = 2
Query:   44 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            MVSGSGICAK VVVDARHHMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLAKLR KA + AE++L P++E++A +KY
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 110/184 (59.78%), Postives = 132/184 (71.74%), Query Frame = 2
Query:   71 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEER 622
            K VVVD R H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+  FL+KRMNT P  GP HFR+PA+ILWRTIRGMIPHKT            +EGVP PYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW + D +  LE+KRK ++   Y R+K L  LR KA  A   +
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57
Identity = 103/190 (54.21%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++G   E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 102/190 (53.68%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.740e-56
Identity = 102/190 (53.68%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
The following BLAST results are available for this feature:
BLAST of CF836725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
R13A4_ARATH7.128e-9783.0160S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH4.621e-9681.0760S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A3_ARATH5.109e-9581.5560S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH4.325e-9480.5860S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU5.287e-9279.6160S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA4.948e-9077.1860S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA1.113e-5759.7860S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN9.419e-5754.2160S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_PONAB2.098e-5653.6860S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_HUMAN2.740e-5653.6860S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836725 ID=CF836725; Name=CF836725; organism=Citrus sinensis; type=EST; length=673bp
TTTTTCACTTCACCACTCCAGTGAGCGCGCCGTTTGCACGAAAATGGTGT
CAGGTTCAGGGATCTGCGCGAAAAGAGTGGTGGTGGACGCCAGGCACCAC
ATGCTCGGCCGCCTTGCCTCCGTTTTGGCCAAGGAGCTCTTGAACGGCCA
GAAGGTCGTCGTCGTCCGGTGCGAGGAGATTTGTATATCAGGTGGGCTTG
TTAGGCAGAAGATGAAGTACATGAGGTTCTTGAGAAAGAGGATGAACACT
AAGCCTTCTCATGGTCCCATCCATTTTCGAGCTCCTGCTAAGATCCTTTG
GCGTACCATCCGTGGGATGATTCCCCACAAGACTAAGCGTGGAGCTGCAG
CCCTTGCTCGTTTGAAGGCTTATGAAGGAGTTCCTGCTCCATATGACAAG
ACAAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTTCAAAA
AGGACACAAGTACTGCTTGTTGGGCAGGCTTTCATCTGAAGTAGGATGGA
ACTATTATGACACCATTAAGGAGCTTGAGAAGAAGAGAAAGGAGAGGGCC
CAGGTAGCTTATGAGAGGAGGAAGCAGTTGGCTAAATTGAGGGTCAAAGC
TGAGAAGGCTGCCGAGGAGAGGCTTGGTCCCCAGCTAGAAATCATTGCTC
CCATCAAGTATTGATGATGATGA
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