CF836727

Overview
NameCF836727
Unique NameCF836727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836727 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:  563 HPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMA 724
            HP L++ ERKRLCR++DC+KLSM+ACMHAA+NE LPLRVVVQVLF EQ + + A
Sbjct:  555 HPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNA 608
[Close]
BLAST of CF836727 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = -2 
Query:  563 HPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMA 724
            HP L + ERKRLCR++DC+KLS +ACMHAA+NE LPLRVVVQVLF EQ + + A
Sbjct:  558 HPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNA 611
[Close]
BLAST of CF836727 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = -2 
Query:  560 HPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFE--QARATMAG 724
            HP L + ER+ LCR+LDC+KLS+EAC HAA+NE LPLR++VQVLFFE  Q R ++AG
Sbjct:  459 HPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAG 515
The following BLAST results are available for this feature:
BLAST of CF836727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPT3_ARATH2.047e-1570.37Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.016e-1468.52Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH6.586e-1464.91BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03H11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836727 ID=CF836727; Name=CF836727; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTCCTCTCACGTTCTGAAAATTATAATCTTATTCTCCAATGG
CAGATGAGTAGTCCAAATAACACAAGGAATTTGAGACAATAATCTAACAG
GTTACATCGACAATGCACTTTGATATTCTTTGTTTTTAAGCTAAAAATTA
CAAGGCCATTTCTTAAAGTACAAAAAACAAGAGTATTAGTTACCCTACCA
GCCCCAACTCGAAAACAAGCATAAGTCACTCAATTCTTTTCACTGGAACT
TCTATTGATTGATAACAACTTACTGAACATTTTTTTGGGTCGTGCAGGAA
GAGCACAGAAAGCCTTAAATTTGGAAGTTCTTCCCATTCCATCTGGGTGC
AAATCATTTTCATCTAATTCATCATCTTCAGCTAGTTTCATTCGTAAAGT
TGAAAGCTTTGATTTTGGAGATTTAAGCCCTGAGATGCTCCATTGATCAT
CCCCTGGAATGGTACTAGTGGTGCTTAATGGTGGTGGAGGCCTTGACGGG
TCAATGCCATGCCCCGCTAGCAGTGCCTTGATGTTGCTAGGCAGCTCAGT
CATTTTGCCACCGGCCATTGTGGCCCGAGCTTGCTCAAAGAATAGAACTT
GTACCACCACCCTTAATGGGAGTAACTCATTTCTTGCAGCATGCATGCAG
GCCTCCATAGATAATTTTTTGCAGTCTAGAATTCGGCACAACCTTTTCCT
TTCACACTTGTTTAGGTCCGGATGT
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