CF836728

Overview
NameCF836728
Unique NameCF836728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3778 contig Csv1_Contig3778:153..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836728 vs. ExPASy Swiss-Prot
Match: UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.015e-26
Identity = 66/115 (57.39%), Postives = 87/115 (75.65%), Query Frame = -1 
Query:  249 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPTASSGSGAEAKPTSATGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSGKKE-QVQD 590
            MA+R A+R  SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP  +   +AS    A A   SA+  S  KVS D+ RNYAV+AG++  V ++GWYLK+ GKK+ +VQ+
Sbjct:    1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAAGSASEAKVAGA-TASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113
The following BLAST results are available for this feature:
BLAST of CF836728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP2_ARATH6.015e-2657.39Uncharacterized protein At2g27730, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03H12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836728 ID=CF836728; Name=CF836728; organism=Citrus sinensis; type=EST; length=641bp
TTTTTTTTTTTTTTTTTGAATAAGAGAATTTTTACTAACAAAAGGTTCAT
TTGGTAACACCAAAGACAGACTTTGGAATTCAACCAGTGCCTGGTGAAAC
AAAAGAGAAATAATACAAACAAAACGGGGTCAATAATAATCCAAGTTCTG
TTTATTTCAAAGCAATGTATGAACTCAGTAGTGAGCAGTTGTCGTAGATA
GAATGTCGTCCATGGCCCTCATTATCTATATCTAGCATATTGACTTCAGT
CCTGGACTTGTTCTTTCTTCCCGCTTGATTTGAGATACCATCCGAGAGCA
CTAACACCAGTTATGATACCAGCTATGACTGCATAGTTACGGTACTGGTC
AGTTGATACTTTCTCAGTTGAAGCTCCCGTGGCTGAGGTAGGTTTGGCTT
CAGCTCCTGACCCTGAGCTAGCAGTAGGTGTCTCTTCCGGTTTGGGTCCC
TTGCGTGCCATCTTCTCCAATTTCTCTTGCTCAACTTTTTTTATGTAGAC
ATTCTCAGCTGCTTTTTCCTCCTCGCTCAGTACTTTGCCACTGCTTGAGA
ACCTTCGAGAAAAATTTCTTACAGCAATCCTTGAAGCCATGATGGTGGTC
ATAAAACCCTTTTGGATACACGGAGGAAGCTTTTCGGCTTT
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