CF836730

Overview
NameCF836730
Unique NameCF836730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 95/188 (50.53%), Postives = 126/188 (67.02%), Query Frame = -1
Query:  333 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 875
            G+FFL+WYS  L+ HG+++L  A  +F    V I+ KV+GIHW Y   SHA ELTAG+YN   RDGY PIA+MLARH A  NFTC+EMRD EQP +A  AP++LV+QV S+  K ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  262 GKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 2.020e-45
Identity = 96/188 (51.06%), Postives = 122/188 (64.89%), Query Frame = -1
Query:  333 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 875
            G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y   +HA ELTAGYYN   RDGY PIA+ML+RH AI NFTC+EMRD EQP DA   P++LV+QV S   +  + +AGENALPRYD  A+ Q IL A    V+        M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  260 GKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQD 447          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.976e-44
Identity = 93/184 (50.54%), Postives = 123/184 (66.85%), Query Frame = -1
Query:  345 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 875
            G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH  I NFTC+EMRD EQ  DA  AP++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+
Sbjct:  260 GKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMH 443          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.976e-44
Identity = 94/188 (50.00%), Postives = 125/188 (66.49%), Query Frame = -1
Query:  333 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 875
            G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y + +HA ELTAGYYN   RDGY PIA++++RH AI NFTC+EMRD EQ  DA  +P+KLV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  260 GKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMHADQD 447          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.213e-43
Identity = 92/188 (48.94%), Postives = 122/188 (64.89%), Query Frame = -1
Query:  333 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 875
            G+FFL+WYS  LL+HG+ IL  A   F    V +++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH A  NFTC+EMRD EQ  DA   P++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  260 GKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMHADQD 447          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.385e-43
Identity = 97/220 (44.09%), Postives = 131/220 (59.55%), Query Frame = -1
Query:  261 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQV--------EREAEHFVHVTQPLVQ 875
            G+FFL+WYS  L+ HG++IL  A  +F    V++++KV+GIHW Y   +HA ELTAGYYN   RDGY  IA ML RH A  NFTC EMRD EQ  +A  APE+LV+QV SA  +  + LA ENAL RYD  A+  ILR A       +   + ++  FTYLR++  LFQ  N+  F  FV++M+   D +  ++ V        E   E  + V QP ++
Sbjct:  257 GKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEEILEVAQPKLE 476          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.038e-41
Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = -1
Query:  345 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 875
            G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  257 GRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.355e-41
Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = -1
Query:  345 SPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 884
            S  G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  254 SEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.150e-41
Identity = 88/184 (47.83%), Postives = 119/184 (64.67%), Query Frame = -1
Query:  345 GEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 875
            G+FFLSWYS  L+ HG++IL  A  +F    V++++K++GIHW Y   +HA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ ++A  APE+LV+QV SA  +  + +A ENAL RYD  A+  ILR A       +   + ++  FTYLR++  L +  N+  F  FV+KM+
Sbjct:  257 GKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CF836730 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.556e-40
Identity = 86/191 (45.03%), Postives = 119/191 (62.30%), Query Frame = -1
Query:  333 SPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD-------VDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 884
            S  G+FF++WYS  L+ HG++IL  A  IF    V ++ KV+GIHW Y   SHA ELTAGYYN   RDGY PIA+ML++H  I NFTC+EM+D +   +AL AP++LV++V S   K  + +AGENAL  Y    + QIL  A  +          +M  FTYLR++  +FQ +N+  F   V+KM+  +D
Sbjct:  259 SEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQD 449          
The following BLAST results are available for this feature:
BLAST of CF836730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMYB_IPOBA3.117e-4650.53Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN2.020e-4551.06Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_TRIRP4.976e-4450.54Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA4.976e-4450.00Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN4.213e-4348.94Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE9.385e-4344.09Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORSP1.038e-4148.91Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_HORVU1.355e-4148.66Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_WHEAT5.150e-4147.83Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_ARATH2.556e-4045.03Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836730 ID=CF836730; Name=CF836730; organism=Citrus sinensis; type=EST; length=884bp
TTTTTTTTTTTTTTTATATAGGAAGTTTCATAGCTGAATAAATTTGTCTT
ATTACATTACATCTGGTTTAACGTGTTTATAGAAACAATACATATGTATA
TAAGTGACTTAACATTTTAAAAAGCTACAGCATAATAAAAAGAGCCATAG
CAAAATGAGGGACCTAGTCATTTTTTCTAACTTGAAAGAAAACTTGCAAC
AAGGCATGTCGTAACAAAACAAAACATAGCCTTTTAGTGCATAAGGGCCA
CGGCAGCCTCTTGCACCAATGGCTGGGTCACATGGACGAAGTGCTCAGCT
TCGCGCTCCACTTGCTCCAAACACCGGTGAACATCCTTCCCTTCATTCAT
CTTCTTCACAAATGCCACAAACTGTCTCCAATTATCGGGTTGGAATAAAT
GTGGATTCATCCTCAAGTACGTGAATGCACACATCTGTTTGTCTACATCA
AGTGATGCTGCTCGCAAGATCTGCTCGTGAGCGTATTCATCATAACGTGG
CAACGCATTTTCCCCAGCCAGTGGAACGTGTGCTTTCTGAGTTGCTGAAG
CCACTTGCTTGACTAGCTTCTCAGGTGCACAAAGGGCATCTTGTGGTTGT
TCATGATCACGCATCTCTATGCAAGTAAAGTTGAATATGGCACCATGTCG
TGCTAGCATCTGGGCAATAGGGAGGTAACCATCACGGAATCGTGTATTGT
AATATCCAGCTGTGAGCTCAGGGGCATGGGACCTAGACCCATAGTGCCAG
TGGATTCCTGCAACCTTAACCGAGATCTTAACACCTGTAGCATCGAAAAT
TGCCTTGGCAGATGAGAGAATTCTCTCTCCGTGATCTAAGAGCATCTGCG
AATACCAGCTTAGGAAAAATTCACCATAAGGGCT
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