CF836731

Overview
NameCF836731
Unique NameCF836731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9394 contig Csv1_Contig9394:1216..1943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 101/205 (49.27%), Postives = 136/205 (66.34%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 606
            + T+FFR  NG + +  G+FFL+WYS  L+ HG+++L  A  +F    V I+ KV+GIHW Y   SHA ELTAG+YN   RDGY PIA+MLARH A  NFTC+EMRD EQP +A  AP++LV+QV S+  K ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  246 DKTEFFRP-NGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 4.119e-48
Identity = 103/205 (50.24%), Postives = 131/205 (63.90%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 606
            E T FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y   +HA ELTAGYYN   RDGY PIA+ML+RH AI NFTC+EMRD EQP DA   P++LV+QV S   +  + +AGENALPRYD  A+ Q IL A    V+        M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  244 ESTGFF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQD 447          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.555e-47
Identity = 100/201 (49.75%), Postives = 133/201 (66.17%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 594
            E T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH  I NFTC+EMRD EQ  DA  AP++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+
Sbjct:  244 ESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMH 443          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.555e-47
Identity = 101/205 (49.27%), Postives = 135/205 (65.85%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 606
            E T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F    VK+++KV+GIHW Y + +HA ELTAGYYN   RDGY PIA++++RH AI NFTC+EMRD EQ  DA  +P+KLV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  244 ESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMHADQD 447          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 99/205 (48.29%), Postives = 132/205 (64.39%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 606
            E T+FF K NG + +  G+FFL+WYS  LL+HG+ IL  A   F    V +++KV+GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH A  NFTC+EMRD EQ  DA   P++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  244 ESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMHADQD 447          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 104/237 (43.88%), Postives = 141/237 (59.49%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQV--------EREAEHFVHVTQPLVQ 678
            E TQFF  +NG + +  G+FFL+WYS  L+ HG++IL  A  +F    V++++KV+GIHW Y   +HA ELTAGYYN   RDGY  IA ML RH A  NFTC EMRD EQ  +A  APE+LV+QV SA  +  + LA ENAL RYD  A+  ILR A       +   + ++  FTYLR++  LFQ  N+  F  FV++M+   D +  ++ V        E   E  + V QP ++
Sbjct:  241 EKTQFFA-DNGTYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEEILEVAQPKLE 476          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.499e-45
Identity = 99/201 (49.25%), Postives = 128/201 (63.68%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 594
            E TQFFR +NG + S  G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  241 ERTQFFR-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.264e-45
Identity = 98/201 (48.76%), Postives = 128/201 (63.68%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 594
            E TQFFR +NG + +  G FFL+WYS  L+ HG+RIL  A  +F    V++++K++GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  241 ERTQFFR-DNGTYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.240e-44
Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 594
            E TQFF K+NG + +  G+FFLSWYS  L+ HG++IL  A  +F    V++++K++GIHW Y   +HA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ ++A  APE+LV+QV SA  +  + +A ENAL RYD  A+  ILR A       +   + ++  FTYLR++  L +  N+  F  FV+KM+
Sbjct:  241 EKTQFF-KDNGTYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CF836731 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43
Identity = 92/205 (44.88%), Postives = 129/205 (62.93%), Query Frame = 1
Query:   13 EDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD-------VDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 606
            E+T FF+K+ G + S  G+FF++WYS  L+ HG++IL  A  IF    V ++ KV+GIHW Y   SHA ELTAGYYN   RDGY PIA+ML++H  I NFTC+EM+D +   +AL AP++LV++V S   K  + +AGENAL  Y    + QIL  A  +          +M  FTYLR++  +FQ +N+  F   V+KM+  +D
Sbjct:  246 EETGFFKKD-GTYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQD 449          
The following BLAST results are available for this feature:
BLAST of CF836731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMYB_IPOBA1.084e-4849.27Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN4.119e-4850.24Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_TRIRP4.555e-4749.75Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA4.555e-4749.27Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN3.856e-4648.29Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE1.914e-4543.88Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU2.499e-4549.25Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP3.264e-4548.76Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_WHEAT1.240e-4447.76Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_ARATH3.055e-4344.88Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03H14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836731 ID=CF836731; Name=CF836731; organism=Citrus sinensis; type=EST; length=728bp
ACAACTGGCCACGAAGATACACAGTTTTTCCGAAAAGAAAATGGTGGTTG
GTGTAGCCCTTATGGTGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCT
TAGATCACGGAGAGAGAATTCTCTCATCTGCCAAGGCAATTTTCGATGCT
ACAGGTGTTAAGATCTCGGTTAAGGTTGCAGGAATCCACTGGCACTATGG
GTCTAGGTCCCATGCCCCTGAGCTCACAGCTGGATATTACAATACACGAT
TCCGTGATGGTTACCTCCCTATTGCCCAGATGCTAGCACGACATGGTGCC
ATATTCAACTTTACTTGCATAGAGATGCGTGATCATGAACAACCACAAGA
TGCCCTTTGTGCACCTGAGAAGCTAGTCAAGCAAGTGGCTTCAGCAACTC
AGAAAGCACACGTTCCACTGGCTGGGGAAAATGCGTTGCCACGTTATGAT
GAATACGCTCACGAGCAGATCTTGCGAGCAGCATCACTTGATGTAGACAA
ACAGATGTGTGCATTCACGTACTTGAGGATGAATCCACATTTATTCCAAC
CCGATAATTGGAGACAGTTTGTGGCATTTGTGAAGAAGATGAATGAAGGG
AAGGATGTTCACCGGTGTTTGGAGCAAGTGGAGCGCGAAGCTGAGCACTT
CGTCCATGTGACCCAGCCATTGGTGCAAGAGGCTGCCGTGGCCCTTATGC
ACTAAAAGGCTATGTTTTGTTTTGTTAC
back to top