CF836736

Overview
NameCF836736
Unique NameCF836736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836736 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 4.056e-34
Identity = 76/180 (42.22%), Postives = 115/180 (63.89%), Query Frame = -2
Query:  274 KQILRYLKGTIFHGLHLRSSQS--HSLIAYSNSDWGGNLDDRSSTSAYVI-YFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICWIRNLLGELGINFSMPI-LHCDNLGATYLCSNPIYHLKMKHVEIDFYFARDKIAAGLLCVSHIPSEN*LADTLTKPLSRNRYIAARSKLGVL 801
            K++LRYLKGTI   L  + + +  + +I Y +SDW G+  DR ST+ Y+   F  N I W++K+Q SVA SSTEAE+ A+  AV E  W++ LL  + I    PI ++ DN G   + +NP  H + KH++I ++FAR+++   ++C+ +IP+EN LAD  TKPL   R++  R KLG+L
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401          
BLAST of CF836736 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.442e-25
Identity = 62/177 (35.03%), Postives = 102/177 (57.63%), Query Frame = -2
Query:  277 AAKQILRYLKGTIFHGLHLRSSQSHSLIAYSNSDWGGNLDDRSSTSAYVIYFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICWIRNLLGELGINFSMPILHCDNLGATYLCSNPIYHLKMKHVEIDFYFARDKIAAGLLCVSHIPSEN*LADTLTKPLSRNRYIAARSKLGV 807
            A K ILRYL+GT    L    S    L  Y+++D  G++D+R S++ Y+  F G +ISW SK Q+ VA S+TEAE+ A      E+ W++  L ELG++    +++CD+  A  L  N +YH + KH+++ +++ R+ +    L V  I +    AD LTK + RN++   +  +G+
Sbjct: 1150 AVKWILRYLRGTTGDCLCFGGSDP-ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325          
BLAST of CF836736 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  544 KQILRYLKGTIFHGLHLRSSQSHSLIAYSNSDWGGNLDDRSSTSAYVIYFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICW 801
            K++LRY+KGTIFHGL++  +   ++ A+ +SDW G    R ST+ +  + G N ISWS+K+Q +V+RSSTE E+RA+A   +E+ W
Sbjct:  140 KRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225          
The following BLAST results are available for this feature:
BLAST of CF836736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
COPIA_DROME4.056e-3442.22Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC3.442e-2535.03Retrovirus-related Pol polyprotein from transposon... [more]
M810_ARATH3.120e-1846.51Uncharacterized mitochondrial protein AtMg00810 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03H17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836736 ID=CF836736; Name=CF836736; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTTTTTTTGAGAAATTGTATGAATCAATAATTTATCAATGCCG
CTAACGTTACAATTTATACAAGTCAGGCATACTTGGCTGATAAGCCAAAC
ACTATAAGATAAGTCATAGCCTATAAGATAAATACAAGCTAAGCCATAGC
CTATATGATAATTACAAGATAACGGTAAAGAGCTATAAGATAAGATTACA
AGTTATTGAAACAGAGAGTAGTTATCTATGTACATGTTTGGCTAATACGT
CCCCGCAAGATAGGGGTTCCATCTAGAACTCCTAGCTTGGAACGTGCAGC
AATATAACGATTGCGAGACAGTGGTTTGGTCAAGGTATCAGCCAACTAAT
TTTCTGAAGGAATATGAGAAACACAAAGAAGACCTGCTGCAATTTTATCA
CGAGCAAAATAAAAATCAATTTCTACGTGTTTCATCTTTAAGTGATAAAT
CGGATTTGAACATAAGTATGTCGCTCCAAGATTATCACAATGTAGAATAG
GCATAGAAAAGTTTATACCAAGTTCACCCAACAAGTTCCTGATCCAACAT
ATTTCTGAAACAGCAGCAGCTATTGCTCGAAATTCTGCCTCTGTAGATGA
GCGAGCAACAGAACGTTGCTTTTTGGATGACCATGAAATTGAATTACCTC
CAAAATAAATAACATAGGCACTAGTAGAACTGCGATCATCAAGATTTCCT
CCCCAATCAGAATTAGAGTAAGCTATCAAGGAATGCGACTGAGATGAGCG
TAGATGTAAACCATGAAAAATTGTCCCTTTCAAATATCTAAGTATTTGCT
TAGCAGCT
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