CF836738

Overview
NameCF836738
Unique NameCF836738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836738 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.113e-36
Identity = 81/198 (40.91%), Postives = 124/198 (62.63%), Query Frame = -1
Query:  273 NKLSQFMRQPSQIHWQAAKQILRYLKGTIFHGLHLRSSQS--HSLIAYSNSDWGGNLDDRSSTSAYVI-YFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICWIRNLLGELGINFSMPI-LHCDNLGATYLCSNPIYHLKMKHVEIDFYFARDKIAAGLLCVSHIPSEN*LADTLTKPLSRNRYIAARSKLGVL 854
            N LS++  + +   WQ  K++LRYLKGTI   L  + + +  + +I Y +SDW G+  DR ST+ Y+   F  N I W++K+Q SVA SSTEAE+ A+  AV E  W++ LL  + I    PI ++ DN G   + +NP  H + KH++I ++FAR+++   ++C+ +IP+EN LAD  TKPL   R++  R KLG+L
Sbjct: 1204 NILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401          
BLAST of CF836738 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.599e-30
Identity = 67/191 (35.08%), Postives = 112/191 (58.64%), Query Frame = -1
Query:  276 LSQFMRQPSQIHWQAAKQILRYLKGTIFHGLHLRSSQSHSLIAYSNSDWGGNLDDRSSTSAYVIYFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICWIRNLLGELGINFSMPILHCDNLGATYLCSNPIYHLKMKHVEIDFYFARDKIAAGLLCVSHIPSEN*LADTLTKPLSRNRYIAARSKLGV 848
            +S+F+  P + HW+A K ILRYL+GT    L    S    L  Y+++D  G++D+R S++ Y+  F G +ISW SK Q+ VA S+TEAE+ A      E+ W++  L ELG++    +++CD+  A  L  N +YH + KH+++ +++ R+ +    L V  I +    AD LTK + RN++   +  +G+
Sbjct: 1136 VSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDP-ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325          
BLAST of CF836738 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.177e-20
Identity = 44/104 (42.31%), Postives = 69/104 (66.35%), Query Frame = -1
Query:  543 NKLSQFMRQPSQIHWQAAKQILRYLKGTIFHGLHLRSSQSHSLIAYSNSDWGGNLDDRSSTSAYVIYFGGNSISWSSKKQRSVARSSTEAEFRAIAAAVSEICW 854
            N + Q M +P+   +   K++LRY+KGTIFHGL++  +   ++ A+ +SDW G    R ST+ +  + G N ISWS+K+Q +V+RSSTE E+RA+A   +E+ W
Sbjct:  122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225          
The following BLAST results are available for this feature:
BLAST of CF836738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
COPIA_DROME2.113e-3640.91Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC8.599e-3035.08Retrovirus-related Pol polyprotein from transposon... [more]
M810_ARATH6.177e-2042.31Uncharacterized mitochondrial protein AtMg00810 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03H18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836738 ID=CF836738; Name=CF836738; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTGAAGAAATTGTATGAATCAATAATTTATCAATGAG
TAACGTTACAATTTATACAAGTCAGGCATACTTGGCTGATAAGCCAAACA
CTATAAGATAAGTCATAGCCTATAAGATAAATACAAGCTAAGCCATAGCC
TATATGATAATTACAAGATAACGGTAAAGAGCTATAAGATAAGATTACAA
GTTATTGAAACAGAGAGTAGTTATCTATGTACATGTTTGGCTAATACGTC
CCCGCAAGATAGGTGTTCCATCTAGAACTCCTAGCTTGGAACGTGCAGCA
ATATAACGATTGCGAGACAGTGGTTTGGTCAAGGTATCAGCCAACTAATT
TTCTGAAGGAATATGAGAAACACAAAGAAGACCTGCTGCAATTTTATCAC
GAGCAAAATAAAAATCAATTTCTACGTGTTTCATCTTTAAGTGATAAATC
GGATTTGAACATAAGTATGTCGCTCCAAGATTATCACAATGTAGAATAGG
CATAGAAAAGTTTATACCAAGTTCACCCAACAAGTTCCTGATCCAACATA
TTTCTGAAACAGCAGCAGCTATTGCTCGAAATTCTGCCTCTGTAGATGAG
CGAGCAACAGAACGTTGCTTTTTGGATGACCATGAAATTGAATTACCTCC
AAAATAAATAACATAGGCACTAGTAGAACTGCGATCATCAAGATTTCCTC
CCCAATCAGAATTAGAGTAAGCTATCAAGGAATGCGACTGAGATGAGCGT
AGATGTAAACCATGAAAAATTGTCCCTTTCAAATATCTAAGTATTTGCTT
AGCAGCTTGCCAATGAATTTGTGAAGGTTGTCGCATGAACTGAGATAATT
TGTT
back to top