CF836739

Overview
NameCF836739
Unique NameCF836739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.731e-40
Identity = 88/231 (38.10%), Postives = 134/231 (58.01%), Query Frame = 1
Query:   94 EPTSITQALKDP---QWLAAMTTEYRALISNNTWDLVLPSPNQNLVSNKWVFRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVRLVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAYGFHQCRYDASLFI--YNTNGVRVYFLA*VDDIIITGSHNAFISHFIDALSAKFSLQDLG 771
            EP S+ + L  P   Q + AM  E  +L  N T+ LV     +  +  KWVF++K+  D  + R+KA LV KGF Q+ GIDF E F+PV+K T++R ++ L  +    + QLD+  AFL+G L+EE++M+QP GF  + K + VC+LNKS+YGLKQAPR W+     F+ +  + +   D  ++   ++ N   +  L  VDD++I G     I+     LS  F ++DLG
Sbjct:  810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1039          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.005e-34
Identity = 81/217 (37.33%), Postives = 121/217 (55.76%), Query Frame = 1
Query:  133 WLAAMTTEYRALISNNTWDLVLPSPNQNLVSNKWVFRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVRLVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAYGFHQCRYDASLFIYNTNGV--RVYFLA*VDDIIITGSHNAFISHFIDALSAKFSLQDLGAL 777
            W  A+ TE  A   NNTW +     N+N+V ++WVF VK    G+  R+KA LVA+GF Q+  ID++ETF PV + ++ R ++ LV+     + Q+D+  AFL G L+EE++M+ P G   S   + VC+LNK+IYGLKQA R WF      L    F     D  ++I +   +   +Y L  VDD++I       +++F   L  KF + DL  +
Sbjct:  906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI 1120          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.328e-25
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   94 EPTSITQALKDPQWLAAMTTEYRALISNNTWDLVLPSPNQNLVSNKWVFRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVRLVI 381
            EP S+  ALKDP W  AM  E  AL  N TW LV P  NQN++  KWVF+ K   DG++DR KA LVAKGFHQ  GI F ET++PV++  T+R ++
Sbjct:   27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122          

HSP 2 Score: 27.7202 bits (60), Expect = 3.328e-25
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  416 NWILIMLFSMVIFKRKCS*NNLVVFFIL 499
            NW+  M FSM IFK+K    NL+V  IL
Sbjct:  135 NWMFKMHFSMGIFKKKFICINLLVLRIL 162          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-J PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14
Identity = 53/191 (27.75%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  205 PNQNLVSNKWVFRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVRLVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAYGFHQCRYDASLFIYNTNGVRVYFLA*VDDIIITGSHNAFISHFIDALSAKFSLQDLGAL 777
            P+  +V    +F  KR        +KA +V +G  Q P   +       +    +++ + +       ++ LDIN+AFLY  L+EE+++  P      +    V +LNK++YGLKQ+P+ W   L  +L   G     Y   L  Y T    +     VDD +I  S+   +  FI+ L + F L+  G L
Sbjct: 1318 PDNLIVPTNTIFTKKRN-----GIYKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL--YQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTL 1494          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14
Identity = 53/191 (27.75%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  205 PNQNLVSNKWVFRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVRLVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAYGFHQCRYDASLFIYNTNGVRVYFLA*VDDIIITGSHNAFISHFIDALSAKFSLQDLGAL 777
            P+  +V    +F  KR        +KA +V +G  Q P   +       +    +++ + +       ++ LDIN+AFLY  L+EE+++  P      +    V +LNK++YGLKQ+P+ W   L  +L   G     Y   L  Y T    +     VDD +I  S+   +  FI+ L + F L+  G L
Sbjct: 1317 PDNLIVPTNTIFTKKRN-----GIYKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL--YQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTL 1493          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 35/121 (28.93%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  418 LDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAYGFHQCRYDASLFIYNTNGVRVYFLA*VDDIIITGSHNAFISHFIDALSAKFSLQDLGALN 780
            +D++ AFL   + E +++KQP GF     P++V  L   +YGLKQAP  W   +++ L   GF +   +  L+  +T+   +Y    VDD+++              L+  +S++DLG ++
Sbjct:    1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVD 121          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: YM14B_YEAST (Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-MR2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 64/239 (26.78%), Postives = 114/239 (47.70%), Query Frame = 1
Query:   19 KPKKKISSTLNHLQVHSNHPLPTSC---EPTSITQALKDPQ-WLAAMTTEYRALISNNTWDLVLPSPNQNLVSNKWV---FRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVR-----LVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAY-GFHQCRYDASLFIYNTNGVRVYFLA*VDDIII 696
            + KK+I        V S  P+ T+    E  +  + +K+ + ++ A   E   L+   TWD       + +   + +   F   RK DG+    KA  VA+G  Q P     +T++P ++  TV        + L L   + + QLDI++A+LY  ++EE++++ P     ++K   + RL KS+YGLKQ+   W+ T+  +L+   G  + R  + +F       +V     VDD+I+
Sbjct: 1208 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQHP-----DTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMIL 1431          
BLAST of CF836739 vs. ExPASy Swiss-Prot
Match: YE12B_YEAST (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ER2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 64/239 (26.78%), Postives = 114/239 (47.70%), Query Frame = 1
Query:   19 KPKKKISSTLNHLQVHSNHPLPTSC---EPTSITQALKDPQ-WLAAMTTEYRALISNNTWDLVLPSPNQNLVSNKWV---FRVKRKPDGSIDRFKACLVAKGFHQRPGIDFQETFNPVIKPTTVR-----LVICLVLACGWSLRQLDINNAFLYGHLQEEVFMKQPSGFFYSNKPNFVCRLNKSIYGLKQAPRAWFTTLHHFLLAY-GFHQCRYDASLFIYNTNGVRVYFLA*VDDIII 696
            + KK+I        V S  P+ T+    E  +  + +K+ + ++ A   E   L+   TWD       + +   + +   F   RK DG+    KA  VA+G  Q P     +T++P ++  TV        + L L   + + QLDI++A+LY  ++EE++++ P     ++K   + RL KS+YGLKQ+   W+ T+  +L+   G  + R  + +F       +V     VDD+I+
Sbjct: 1208 RSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQHP-----DTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMIL 1431          
The following BLAST results are available for this feature:
BLAST of CF836739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
POLX_TOBAC2.731e-4038.10Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME1.005e-3437.33Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
M820_ARATH3.328e-2553.13Uncharacterized mitochondrial protein AtMg00820 OS... [more]
YJ41B_YEAST5.734e-1427.75Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomy... [more]
YH41B_YEAST5.734e-1427.75Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomy... [more]
YCH4_YEAST9.154e-1228.93Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
YM14B_YEAST7.749e-1126.78Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharo... [more]
YE12B_YEAST7.749e-1126.78Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03H18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836739 ID=CF836739; Name=CF836739; organism=Citrus sinensis; type=EST; length=780bp
TCCCAAAATAACATCCATAAACCAAAAAAAAAAATTTCTTCCACTTTAAA
CCATCTACAGGTACACTCCAATCATCCATTGCCAACTTCTTGTGAACCCA
CCTCCATTACACAGGCACTTAAAGATCCTCAATGGCTTGCTGCCATGACT
ACTGAATATCGTGCCCTTATCTCCAATAACACATGGGACCTTGTACTTCC
ATCACCTAATCAGAACCTTGTCAGCAATAAGTGGGTGTTTCGGGTTAAAA
GGAAACCTGATGGTAGTATTGATCGATTTAAAGCTTGTCTAGTAGCTAAA
GGTTTCCATCAGCGTCCTGGGATTGATTTTCAGGAAACTTTCAATCCAGT
TATTAAGCCTACTACAGTTCGATTGGTTATTTGCCTAGTCTTGGCATGTG
GCTGGTCCTTACGGCAACTGGATATTAATAATGCTTTTCTCTATGGTCAT
CTTCAAGAGGAAGTGTTCATGAAACAACCTAGTGGTTTTTTTTATTCTAA
CAAACCTAATTTTGTGTGCAGGTTGAATAAATCAATTTATGGCTTAAAAC
AGGCTCCACGTGCATGGTTTACAACTTTACATCATTTCCTACTTGCTTAT
GGTTTTCATCAATGTCGATATGATGCATCATTGTTTATTTATAACACAAA
TGGTGTACGAGTCTACTTTCTTGCCTAAGTTGATGACATTATTATAACGG
GCAGCCATAATGCATTTATTTCTCATTTCATTGATGCTCTTTCAGCTAAA
TTCTCTCTNCAAGATTTGGGGGCTTTAAAC
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