CF836740

Overview
NameCF836740
Unique NameCF836740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3770 contig Csv1_Contig3770:713..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.481e-68
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  237 KLPLGSASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSSLARGES----CPPLQRRFRCASLSEEA 566
            K+P GS SPLIA+P+ QQ  LTEDDEFLIIGCDGIWDVMSSQHAV++ R+GLRRH+DP++CAREL MEA  L + DNLTVIVICF S   G S      P++R   C SLS EA
Sbjct:  255 KMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDDPERCARELAMEAKRLQTFDNLTVIVICFGSELGGGSPSSEQAPIRRVRCCKSLSSEA 368          

HSP 2 Score: 129.798 bits (325), Expect = 5.481e-68
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  569 SVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDWD 814
            ++S + GTTAL AL+ GR LLVANAGDCRAVLCRKGVAV+MS+DHRP+Y  E  R+ E GGYI DGYLNG LSVTRALGDWD
Sbjct:  172 AISRSSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYIEDGYLNGVLSVTRALGDWD 253          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.583e-67
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  237 KLPLGSASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSSLARGES-CPPLQRRFRCASLSEEA 566
            KLP GS SPLI++P+++Q+ LTEDDEFL+IGCDGIWDV++SQ AVS+ RRGL RHNDP +CARELVMEA   NS DNLT +V+CF ++ RG+    PL++R RC SLS EA
Sbjct:  265 KLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMDRGDKPVVPLEKR-RCFSLSPEA 374          

HSP 2 Score: 125.946 bits (315), Expect = 4.583e-67
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  569 SVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYI-RDGYLNGDLSVTRALGDWD 814
            S+S +CGTTALTAL+ GR L+VANAGDCRAVLCRKG A+DMS+DH+P  L ERRRVEE GG+I  DGYLN  L+VTRALGDWD
Sbjct:  181 SISDSCGTTALTALICGRLLMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGGFITNDGYLNEVLAVTRALGDWD 263          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.517e-66
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = -3
Query:  569 ERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDWD 820
            E  VS +CGTTALTAL++GR+LLVANAGDCRAVLCR+GVAVDMS DHR +Y PERRR+E+LGGY  DGYLNG L+VTRA+GDW+
Sbjct:  179 ETIVSGSCGTTALTALIIGRHLLVANAGDCRAVLCRRGVAVDMSFDHRSTYEPERRRIEDLGGYFEDGYLNGVLAVTRAIGDWE 262          

HSP 2 Score: 131.724 bits (330), Expect = 6.517e-66
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = -2
Query:  252 SASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSSLARGESCPPLQRRFRCAS 551
            S+SPLI+DP++ Q++LTEDDEFLI+ CDGIWDV+SSQ+AVS  R+GLRRH DP+QCA EL  EA+ L SSDN+TVIVICFSS+      P  +R   C S
Sbjct:  270 SSSPLISDPEIGQIILTEDDEFLILACDGIWDVLSSQNAVSNVRQGLRRHGDPRQCAMELGKEAARLQSSDNMTVIVICFSSVPSSPKQPQRRRLRFCVS 369          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.550e-64
Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = -2
Query:  237 PLG-SASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSSLARGESCPPLQRRFRCASLSEEA 560
            PLG S SPLI+DPD+QQ++LTE+DEFLI+GCDG+WDVM+SQ+AV+  R+GLRRH DP++CA EL  EA  L+SSDN+TV+VICFSS     S  P +RR R   +S+EA
Sbjct:  310 PLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQYAVTFVRQGLRRHGDPRRCAMELGREALRLDSSDNVTVVVICFSS-----SPAPQRRRIRFC-VSDEA 412          

HSP 2 Score: 132.109 bits (331), Expect = 4.550e-64
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = -3
Query:  572 ERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 820
            ER VSS+CGTTALTALV+GR+L+VAN GDCRAVLCRKG AVDMS DH+ ++ PERRRVE+LGGY    YL GDL+VTRALGDW
Sbjct:  221 ERIVSSSCGTTALTALVIGRHLMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGGYFEGEYLYGDLAVTRALGDW 303          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.009e-63
Identity = 69/118 (58.47%), Postives = 85/118 (72.03%), Query Frame = -2
Query:  258 KLPLGSASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSS---------------LARGESCPPLQRRFRC 566
            K+P GS SPLIA+P+ +Q +LTEDDEFLI+GCDGIWDVM+SQHAVS+ RRGLR+H+DP++CARELVMEA  L ++DNLTVIV+CF S               +AR  SC  L     C
Sbjct:  262 KMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLRQHDDPERCARELVMEAKRLETADNLTVIVVCFVSELGSPRQEQVGGQAGVARPRSCKSLSAEALC 379          

HSP 2 Score: 124.02 bits (310), Expect = 1.009e-63
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  569 VSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDWD 811
            +S + GTTALTALV GR LLVANAGDCRAVLCR+GVA++MS+DHR +Y  E  RV   GGYI DGYLNG LSVTRALGDWD
Sbjct:  180 ISRSSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYIEDGYLNGVLSVTRALGDWD 260          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.965e-52
Identity = 55/86 (63.95%), Postives = 70/86 (81.40%), Query Frame = -2
Query:  309 KLPLGSASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFS 566
            K P GSA PL  +P++Q+  L+EDDEFLI+GCDG+WDVMSSQ AV++AR+ L  HNDP++C+RELV EA   N+ DNLTVIV+CFS
Sbjct:  260 KGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNTCDNLTVIVVCFS 345          

HSP 2 Score: 108.612 bits (270), Expect = 1.965e-52
Identity = 48/83 (57.83%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  572 ERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 820
            + S+  + GTTALTA + GR L++ANAGDCRAVL R+G A+++S+DH+P+   E+ R+E+LGG + DGYLNG LSV RA+GDW
Sbjct:  175 DSSLDISSGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGGVVYDGYLNGQLSVARAIGDW 257          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.321e-50
Identity = 49/82 (59.76%), Postives = 68/82 (82.93%), Query Frame = -2
Query:  309 GSASPLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFS 554
            GS  PL  +P+++++VLTE+DE+LI+GCDG+WDVMSSQ AV++ RR L +HNDP++C++ LV EA   NS DNLTV+V+CFS
Sbjct:  247 GSLCPLSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPERCSQALVKEALQRNSCDNLTVVVVCFS 328          

HSP 2 Score: 105.531 bits (262), Expect = 2.321e-50
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  572 SVSSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 814
            S+  + GTTALTAL+L + +L+ANAGD RAVL ++G A+++S+DH+P+   ER R+E+LGG I DGYLNG LSV RALGDW
Sbjct:  160 SLDRSSGTTALTALILDKTMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDW 240          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.581e-49
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = -3
Query:  572 SSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 808
            S   GTTAL ALV+GR+LLVANAGDCRAVLC +G A++MS+DH+PS   E+ R+E  GGY+ DGYLNG L+V RA+GDW
Sbjct:  164 SLASGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVYDGYLNGQLNVARAIGDW 242          

HSP 2 Score: 102.834 bits (255), Expect = 5.581e-49
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = -2
Query:  306 PLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICFSS 542
            PL A+P+V    LTE+DEFLIIGCDGIWDV  SQ+AV  ARR L+ HNDP  C +ELV EA    S DNL+V+VICF+S
Sbjct:  255 PLSAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFARRKLQEHNDPVTCCKELVDEAIKRKSGDNLSVVVICFNS 333          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.568e-47
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = -3
Query:  572 GTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 796
            GTTALTA++ GR LL+ANAGDCRAVL R G A++MS DHRP  L E+ RVE LGGY+ DGYLNG L VTRALGDW
Sbjct:  161 GTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYVDDGYLNGLLGVTRALGDW 235          

HSP 2 Score: 92.8189 bits (229), Expect = 8.568e-47
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  312 PLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVICF 542
            PL A+P+++ + LT+DDEFLIIG DGIWDV S+Q+ V  ARR L+ HND + C RE+V EA    ++DNLT +++ F
Sbjct:  249 PLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFARRRLQEHNDVKSCCREIVEEAIKRGATDNLTAVLVSF 325          
BLAST of CF836740 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.454e-46
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = -3
Query:  572 SSTCGTTALTALVLGRNLLVANAGDCRAVLCRKGVAVDMSQDHRPSYLPERRRVEELGGYIRDGYLNGDLSVTRALGDW 808
            S   GTTAL A++ GR+L+VANAGDCRAVL R+G A++MS+DH+P    ERRR+E  GG++ DGYLNG L+V RALGD+
Sbjct:  186 SLASGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVFDGYLNGQLNVARALGDF 264          

HSP 2 Score: 101.679 bits (252), Expect = 1.454e-46
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  315 PLIADPDVQQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLARRGLRRHNDPQQCARELVMEASHLNSSDNLTVIVIC 542
            PLIA+P++    LTE+DEFLIIGCDG+WDV  SQ+AV  ARR L+ HNDP  C++ELV EA    S+DN+T +V+C
Sbjct:  280 PLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKELVEEALKRKSADNVTAVVVC 355          
The following BLAST results are available for this feature:
BLAST of CF836740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
P2C02_ORYSJ5.481e-6865.79Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C49_ARATH4.583e-6764.86Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C13_ARATH6.517e-6676.19Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
P2C43_ARATH4.550e-6462.39Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
P2C47_ORYSJ1.009e-6358.47Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C27_ARATH1.965e-5263.95Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C47_ARATH2.321e-5059.76Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C57_ORYSJ5.581e-4965.82Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C54_ORYSJ8.568e-4772.00Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C22_ARATH1.454e-4662.03Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836740 ID=CF836740; Name=CF836740; organism=Citrus sinensis; type=EST; length=822bp
TTTTTTTTTTTTTTTGCAGTGAAACCCAATCCATCAAAAGTCAAAAATCA
TTCCGAACGACTAGTGTTCTCTTCTATCAATACAAAACTGCTGGCTGCTT
TTTGTCTAAGGCCTAAGCATCATCTGAAACAGCCTTAAACAGATAAAAAT
CACATTTCAACAGTATCAGTAAATAGAGTGAAAATAATTTGTATGTACAA
TCAGTTGCCTCCTAACAAACTCCTCAACCTATTTCGAGCTTCTTCAGAGA
GACTGGCGCACCTGAATCTTCGCTGCAGGGGAGGACATGACTCTCCACGT
GCAAGGGAGGAGAAGCAGATAACAATCACAGTGAGATTATCAGATGAATT
CAGGTGTGATGCTTCCATGACAAGTTCTCGAGCACATTGTTGCGGATCAT
TGTGCCGCCTGAGCCCACGACGGGCAAGGCTGACTGCATGCTGGCTTGAC
ATCACATCCCAGATACCATCACAACCAATGATTAGGAATTCATCATCCTC
TGTCAACACAACTTGTTGGACATCTGGATCAGCAATAAGAGGCGATGCAG
ACCCTAGTGGGAGTTTCTATCCCAGTCTCCTAGGGCTCGTGTCACAGATA
GATCACCATTTAGATATCCATCACGAATATAACCACCTAACTCCTCAACT
CGCCTCCGCTCGGGCAGATAGGAAGGCCTATGATCTTGAGACATATCAAC
TGCAACTCCTTTTCTACAGAGAACTGCTCGGCAGTCACCAGCATTTGCAA
CCAGTAAATTCCTTCCAAGCACTAAGGCAGTCAGAGCAGTTGTTCCACAC
GTACTACTAACACTGCGTTCAT
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