CF836741

Overview
NameCF836741
Unique NameCF836741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836741_ssr19 microsatellite CF836741_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
CF836741_ssr31 microsatellite CF836741_ssr31:31..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3770 contig Csv1_Contig3770:20..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.263e-36
Identity = 104/217 (47.93%), Postives = 128/217 (58.99%), Query Frame = 3
Query:  111 MIVGQKMVAETEIICKATAVLDLGLQFNV-KDQ-NLQIDVNLKNKNSSPPSTPRFHELRVSDSVSSEISC------FESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDV-FLAELENSHKKXXXXXXXXXXXERSVSSTCGTTAL 734
            MI+ Q MVAE EI      VLD+    +  KDQ N QID                 E+RVS+SV +EIS       F S +SC   V +T+ E+++ F+P I SGS ADI  R +M+DEHI IDDLSAH GS +    PSAFY VFDGHGGPEAA+++KEN  +LFF+DA  P+   I D  FL ELENSH+K           E  VS +CGTTAL
Sbjct:    1 MILSQTMVAEAEI-----RVLDVKCHISAPKDQKNFQID-----------------EVRVSESVRAEISGSAETPRFGSGMSC---VTTTIGESASDFIPTIRSGSFADIRSRETMEDEHICIDDLSAHLGS-YNFSVPSAFYGVFDGHGGPEAAIFMKENLTRLFFQDAVFPEMPSIVDAFFLEELENSHRKAFALADLAMADETIVSGSCGTTAL 191          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35
Identity = 86/204 (42.16%), Postives = 122/204 (59.80%), Query Frame = 3
Query:  129 MVAETEIICKAT--AVLDLGLQFNVKDQNLQIDVNLKNKNSSPPSTPRFHELRVSDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTAL 734
            MVAE E++ + +  AVL++ L   V            +   SP S+P+    + + SVS  ++   S V      +     +   ++P I SGS ADIGP+ +M+DEHIRIDDLS+  GSLF+ P PSAFYAVFDGHGGPEAA YV+ENA++ FF+D   PQTS+++ V++ E+E S +            + S+S +CGTTAL
Sbjct:    1 MVAEAEVVFQQSLPAVLEIELFDGVS-----------SAVKSPVSSPKLGFTQSTASVSGSLTT--SPVQADIFPEGDCDPSVLDYIPTIRSGSFADIGPKRNMEDEHIRIDDLSSQVGSLFELPKPSAFYAVFDGHGGPEAAAYVRENAIRFFFEDEQFPQTSEVSSVYVEEVETSLRNAFLQADLALAEDCSISDSCGTTAL 191          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 88/182 (48.35%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  216 IDVNLKNKNSSPPSTPRFHELRVSDSV------SSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGP-RISMDDEHIRIDDLSAHFGSLF-KCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQT-SDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTAL 734
            IDV      +  PS  +  E+R+ DS+      S E    ES+ SCS T   T+ E    FVP I SGS AD G  R  M+DEHI IDDLS H GS F + P P AFY VFDGHGG +A+ Y+KENAM LFF+DA   Q+ S ++ +FL ELE SH++           ER VSS+CGTTAL
Sbjct:   55 IDVKSHLSVAKDPSNFQIAEIRIHDSICIDIPSSEETPLLESIKSCSAT---TIEEHVTEFVPNISSGSYADKGDYREYMEDEHICIDDLSDHLGSSFYRFPVPMAFYGVFDGHGGSDASQYIKENAMSLFFEDAVFRQSPSVVDSLFLKELETSHREAYRLADLAMEDERIVSSSCGTTAL 233          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  378 FVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTAL 734
            FVP I SGS ADIGPR  M+DEHIRIDDLSAH GSL  CP PSAFY VFDGHGG +AA Y+K +AM+  F+D++ PQ S +++ ++  +ENS ++           +  +S + GTTAL
Sbjct:   71 FVPSIRSGSFADIGPRRYMEDEHIRIDDLSAHLGSLLVCPLPSAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEFPQASQVDETYVQSVENSVRRAFLQADLALADDLDISRSSGTTAL 189          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29
Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  318 ESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTAL 734
            E+ +   E +    +E S  F P I SGS ADIGPR  M+DEHIRIDDLS H GSL  CP P+AFY VFDGHGGP+AA Y+K +A++LFF+D++ PQ  + ++ F   +E S              + ++S + GTTAL
Sbjct:   45 EAAIEVPELMVKAPVE-SLQFSPNIRSGSFADIGPRRYMEDEHIRIDDLSGHLGSLLMCPAPNAFYGVFDGHGGPDAAAYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLALADDLAISRSSGTTAL 182          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  285 SDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMP 605
            S +   +++    V  C+  +KS  ++  + F+P+  SGSCA+ G +  M+DEHI IDDL  H G+  +C +  AFY VFDGHGG +AA +V++N ++   +D+  P
Sbjct:   50 SSATRLQLAANADVDVCNLVMKS--LDDKSEFLPVYRSGSCAEQGAKQFMEDEHICIDDLVNHLGAAIQCSSLGAFYGVFDGHGGTDAAHFVRKNILRFIVEDSSFP 154          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  315 FESVVSCSETVKSTVMET-SAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMP 605
            FE    C  TV     +  S+ FVP+I SG  +DIG R  M+D H+ I DL+ +FG         +FY VFDGHGG +AA YV++N  ++  +DAD P
Sbjct:   27 FEMEKVCENTVSLDFKQARSSSFVPVIRSGDWSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYGVFDGHGGKDAAHYVRDNLPRVIVEDADFP 124          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  369 SAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTS 614
            ++ F P+  SGS +D GP+ SM+DE I +DDL+ + GS     +  AFY VFDGHGG +AA + K+N MKL  +D   P ++
Sbjct:   64 NSTFQPVFRSGSWSDKGPKQSMEDEFICVDDLTEYIGS-----STGAFYGVFDGHGGVDAASFTKKNIMKLVMEDKHFPTST 140          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  231 KNKNSSPPSTPRFHELRVSDSVSSEISCFESVVSCSETVKSTVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMP 605
            K+K+ SP   P     RV ++                T        S  FVP I SG  +DIG R  M+D H+ I DL+ +FG         +FY VFDGHGG +AA +V++N  ++  +DAD P
Sbjct:   26 KSKSKSPDELPSPRMERVCENT---------------TAADFKQNKSGNFVPNIRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYGVFDGHGGKDAAHFVRDNLPRIIVEDADFP 135          
BLAST of CF836741 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  354 TVMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHFGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDV 629
            T+ +  + FVP   SG+ +DIG R SM+D ++ +D+    FG L     PSAFY VFDGHGG  AA +   +  +   +D + P  S+IN V
Sbjct:   76 TIEKNKSEFVPATRSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFP--SEINKV 165          
The following BLAST results are available for this feature:
BLAST of CF836741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
P2C13_ARATH1.263e-3647.93Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
P2C49_ARATH5.305e-3542.16Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C43_ARATH1.445e-3248.35Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
P2C47_ORYSJ2.306e-3052.94Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C02_ORYSJ9.690e-2946.76Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C27_ARATH2.476e-1638.32Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C27_ORYSJ1.150e-1342.86Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C47_ARATH4.370e-1345.12Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C54_ORYSJ6.310e-1235.20Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C22_ARATH3.132e-1140.22Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836741 ID=CF836741; Name=CF836741; organism=Citrus sinensis; type=EST; length=734bp
CTAAAGAAGCTTTACAAATTCGTTCGTTCGTTCATTCATTCAACTGTTTT
CCAATCTTCTTCTTCACAAATTTTCACTGGTTAATCTGAAAATACGACGT
AGTTTTGGATATGATTGTGGGTCAAAAAATGGTGGCGGAAACAGAGATAA
TTTGCAAAGCTACTGCTGTTTTAGACTTAGGTTTGCAGTTCAATGTGAAA
GATCAAAACTTGCAGATCGATGTTAATCTCAAGAACAAGAATAGTAGCCC
TCCTTCAACTCCAAGATTCCATGAACTTCGTGTTTCTGACTCAGTTTCCT
CTGAAATCTCCTGTTTTGAATCGGTGGTCAGTTGTTCAGAGACCGTTAAA
AGTACTGTTATGGAGACTTCGGCAGTGTTTGTCCCAATCATTTGTTCTGG
CAGCTGTGCTGACATTGGACCAAGGATCTCCATGGATGATGAGCACATTC
GGATTGATGATCTATCTGCCCACTTTGGATCTCTCTTTAAGTGTCCTACT
CCAAGTGCTTTCTATGCAGTGTTTGATGGTCATGGTGGACCTGAGGCAGC
TGTTTATGTCAAGGAGAATGCTATGAAATTATTTTTTAAGGATGCTGATA
TGCCCCAAACATCTGATATCAATGATGTCTTCTTAGCAGAGTTGGAGAAT
TCTCATAAGAAAGCATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACG
CAGTGTTAGTAGTACGTGTGGAACAACTGCTCTG
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