CF836744

Overview
NameCF836744
Unique NameCF836744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3340 contig Csv1_Contig3340:4..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.192e-22
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  227 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL 715
            PV + +E AT  +L+  DW +N+++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ RGI FP  D ++L+PI TP RSV E +  AT+
Sbjct:   12 PVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATI 178          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.286e-22
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  227 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL 715
            PV + +E AT  +L+  DW +N+++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +G+ FP  D ++L+PI TP RSV E +  AT+
Sbjct:   12 PVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATM 178          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.987e-20
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  224 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE 700
            +PV + +E AT  +L+  DWA+N+++CD+IN  +    D  R +KKRIM  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E
Sbjct:   11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVH--DKVLNLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSE 173          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.902e-20
Identity = 63/185 (34.05%), Postives = 102/185 (55.14%), Query Frame = 2
Query:  224 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEV----DATLAEQIQRDIRGQ 748
            +PV + +E AT  +L+  DWA+N+++CD+IN  +    D +R +KKRI+  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E     D+   +  Q++  GQ
Sbjct:   11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVH--DKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQ 193          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.902e-20
Identity = 57/164 (34.76%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  227 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE 700
            PV + +E AT  +L+  DW +N+++CD+IN  +    D +R +KKR+   ++ R   LAL +LET VKNC   F      R     +L +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +GI FP  D ++L+PI TP RSV E +
Sbjct:   12 PVGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVD 173          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  224 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAF-----SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSV 688
            +PV + +E AT  +L   DW++N+++CD+IN  +    D  R IKKRI+  K+     LAL +LET VKNC   F     S+   E VL   +   ++P  +V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP RSV
Sbjct:   11 SPVGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVH--DKVLTLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSV 169          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  215 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  215 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  215 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.830e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  215 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
The following BLAST results are available for this feature:
BLAST of CF836744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TM1L2_MOUSE3.192e-2237.28TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN9.286e-2236.09TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TOM1_MOUSE2.987e-2036.36Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_HUMAN3.902e-2034.05Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TM1L2_XENLA3.902e-2034.76TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TOM1_CHICK2.796e-1836.02Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
HGS_RAT2.617e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE2.617e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN4.464e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN5.830e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836744 ID=CF836744; Name=CF836744; organism=Citrus sinensis; type=EST; length=892bp
GAAGTTCAATAACTTAACCGAGTCGTTGGGCGTCGTCTCAACTCCCATCT
CTATTTTCAGTTTTAAAGGATTTTAAACCGTTGCAAAGATGAGTGATAAT
TTGATGGAGAAAGTTAGTGCCTTTGGTGAACGCCTCAAGATTGGAGGGGC
TGAAGTGGGTCGTAAAATGAGTGAAGGAATGAGCCAAATGAGCTTCAAGA
TGAAGGAGCTCTTCCAAGGCCCAAACCCAGTTGAAAAACTTGTTGAGGAT
GCCACCTCTGAGGCCCTTGAGGAGCCTGATTGGGCCATGAATCTCGATCT
CTGTGACATGATCAATACCGAGAAAATCAGCAGTGTTGATTTGATCCGTG
GCATAAAGAAAAGGATCATGTTGAAGAGCCCTAGGATTCAGTATTTGGCC
TTGGTACTGCTTGAAACAGTTGTTAAAAACTGTGAGAAGGCCTTCTCCGA
GGTGGCAGCTGAGAGGGTTCTTGATGAAATGGTCAAGCTGATTGATGATC
CTCAAACTGTTGTCAATAATAGGAACAAGGCTTTGGTGATGATTGAAGCT
TGGGGTGAGTCCACAAGCGAACTTCGATACTTGCCCGTATATGAAGAAAC
ATACAAGAGTTTAAGATCACGGGGCATCCGGTTTCCGGGACGTGACAATG
AGAGCTTGGCGCCTATTTTTACACCTCCTCGTTCAGTTTCAGAAACAGAA
GTGGATGCTACTCTTGCTGAGCAGATTCAGCGTGATATTCGTGGGCAAAG
CTTTACCAAAGAACAAACAAAGGAAGCCTTTGATGTTGCAAGAAACAGTA
TCGAGCTTCTTTCAACTGTTCTATCATCCTCACCCCAACAAGACGCTTTA
CAGGATGACTTGACAACTACACTAGTGCAACAGTGTCGTCAG
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