CF836749

Overview
NameCF836749
Unique NameCF836749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.414e-45
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = -3
Query:  306 VMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMP 707
            ++D+WQYF HRY+H+NK LY  IH+ HHRL VPYA GALYNHP EGL+ DT G  +++L +G+SP+ ++ FF+ +T+KTVDDHCG   P +     F NN  YHD+HHQ YG + NF+QPFF  WD + GTYMP
Sbjct:  140 IIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTLKTVDDHCGYVFPYDPLQMFFANNARYHDLHHQPYGFQKNFSQPFFTFWDHVLGTYMP 273          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.261e-42
Identity = 84/163 (51.53%), Postives = 104/163 (63.80%), Query Frame = -3
Query:  225 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPYSLEKRPDGGFEALATKDYNQTKD-YKD 710
            L +DTWQYF+HR MH NK LY   HS+HH L VPYA+GAL+N+P+EG L DT+G  ++  ++ ++ R  I  F+FAT+KTVDDHCG  LP + F  LF NN  YHDIHHQ +G K NFAQPFF  WD +F T            GFE    K    T D YK+
Sbjct:  166 LFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATMKTVDDHCGYALPLDPFQWLFPNNAVYHDIHHQQFGIKTNFAQPFFTFWDNLFQTNFK---------GFEEYQKKQRRVTIDKYKE 319          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_PIG (C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  288 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFAT---IKTVDDHCGLWLPGN---LFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPYSL--EKR 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ T   I+T+D H G  +P N   L P  F   + +HD HH  +   Y      F  WDRIFGT   Y+   EKR
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKIHHEFQAPFGMEAEYAHPLETLI---LGTGFFIGIMLLCDHV-ILLWAWVTVRLIETIDVHSGYDIPLNPLHLIP--FYAGSRHHDFHHMNFIGNY---ASTFTWWDRIFGTDAQYNAYNEKR 285          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_MACFA (C-4 methylsterol oxidase OS=Macaca fascicularis GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = -3
Query:  303 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIK---TVDDHCGLWL---PGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPY 710
            ++ DTW YFMHR +HH + +Y +IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ TI+   T+D H G  +   P NL P  F   + +HD HH  +   Y      F  WDRIFGT   Y
Sbjct:  147 VIEDTWHYFMHRLLHHKR-IYKYIHKVHHEFQAPFGMEAEYAHPLETLI---LGTGFFIGIVLLCDHV-ILLWAWVTIRLLETIDVHSGYDIPLNPLNLIP--FYAGSRHHDFHHMNFIGNY---ASTFTWWDRIFGTDSQY 278          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_PONAB (C-4 methylsterol oxidase OS=Pongo abelii GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  288 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIK---TVDDHCGLWL---PGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPYSL--EKR 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ TI+   T+D H G  +   P NL P  F   + +HD HH  +   Y      F  WDRIFGT   Y+   EKR
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKVHHEFQAPFGMEAEYAHPLETLI---LGTGFFIGIVLLCDHV-ILLWAWVTIRLLETIDVHSGYDIPLNPLNLIP--FYAGSRHHDFHHMNFIGNY---ASTFTWWDRIFGTDSQYNAYNEKR 285          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_HUMAN (C-4 methylsterol oxidase OS=Homo sapiens GN=SC4MOL PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  288 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIK---TVDDHCGLWL---PGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPYSL--EKR 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ TI+   T+D H G  +   P NL P  F   + +HD HH  +   Y      F  WDRIFGT   Y+   EKR
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKVHHEFQAPFGMEAEYAHPLETLI---LGTGFFIGIVLLCDHV-ILLWAWVTIRLLETIDVHSGYDIPLNPLNLIP--FYAGSRHHDFHHMNFIGNY---ASTFTWWDRIFGTDSQYNAYNEKR 285          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_RAT (C-4 methylsterol oxidase OS=Rattus norvegicus GN=Sc4mol PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = -3
Query:  303 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFPPL----FKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPY 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L+  T G  +  ++      +   + +   ++T+D H G  +P N   PL    F     +HD HH  +   Y      F  WDRIFGT + Y
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKVHHEFQAPFGIEAEYAHPLETLILGT-GFFIGIVLLCDHVILLWAWVTMRLLETIDVHSGYDIPLN---PLNYIPFYTGARHHDFHHMNFIGNY---ASTFTWWDRIFGTDVQY 278          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_MOUSE (C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = -3
Query:  303 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIK---TVDDHCGLWL---PGNLFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGTYMPY 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ TI+   T+D H G  +   P NL P  F     +HD HH  +   Y      F  WD++FGT   Y
Sbjct:  147 VIEDTWHYFLHRLLHHKR-IYKYIHKVHHEFQAPFGIEAEYAHPLETLI---LGTGFFIGIVLLCDHV-ILLWAWVTIRLLETIDVHSGYDIPLNPLNLVP--FYTGARHHDFHHMNFIGNY---ASTFTWWDKLFGTDAQY 278          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_DANRE (C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -3
Query:  315 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFAT---IKTVDDHCGLWLPGN---LFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGT 710
            ++ DTW YF+HR +HH + +Y +IH +HH    P+   A Y HP+E L    I GA  F+ + +     I  +++ T   ++T+D H G  +P N   L P  F     +HD HH  +   Y      F  WDR+F T
Sbjct:  147 VIEDTWHYFLHRALHHRR-IYKYIHKVHHDFTSPFGMQAEYAHPLETL----ILGAGFFIGTMVFCNHMILLWAWVTFRLLETIDVHSGYDIPLNPLHLIP--FYAGARFHDFHHMNFVGNYGST---FTWWDRLFDT 274          
BLAST of CF836749 vs. ExPASy Swiss-Prot
Match: ERG25_CHICK (C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = -3
Query:  315 LVMDTWQYFMHRYMHHNKFLY*HIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFA---TIKTVDDHCGLWLPGN-LFPPLFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRIFGT 710
            ++ D W YF+HR +HH + +Y +IH +HH  V P+   A Y HP+E L    I GA  F+   +     +  +++     ++T+D H G  +P N L    F     +HD HH  +   Y      F  WDRIFGT
Sbjct:  147 VIEDAWHYFLHRLLHHKR-IYKYIHKVHHEFVSPFGMQAEYAHPLETL----ILGAGFFIGIVVFCNHVVLLWAWVICRLMETIDVHSGYDIPLNPLHLVPFYAGARFHDFHHMNFIGNY---ASTFTWWDRIFGT 274          
The following BLAST results are available for this feature:
BLAST of CF836749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YOOF_SCHPO1.414e-4556.72Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST7.261e-4251.53Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
ERG25_PIG7.567e-1534.90C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL P... [more]
ERG25_MACFA7.567e-1535.21C-4 methylsterol oxidase OS=Macaca fascicularis GN... [more]
ERG25_PONAB9.883e-1534.90C-4 methylsterol oxidase OS=Pongo abelii GN=SC4MOL... [more]
ERG25_HUMAN9.883e-1534.90C-4 methylsterol oxidase OS=Homo sapiens GN=SC4MOL... [more]
ERG25_RAT2.875e-1432.86C-4 methylsterol oxidase OS=Rattus norvegicus GN=S... [more]
ERG25_MOUSE6.406e-1433.10C-4 methylsterol oxidase OS=Mus musculus GN=Sc4mol... [more]
ERG25_DANRE1.093e-1334.06C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol ... [more]
ERG25_CHICK4.152e-1333.82C-4 methylsterol oxidase OS=Gallus gallus GN=SC4MO... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03I02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836749 ID=CF836749; Name=CF836749; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTCAACTGGGACATTAATTTATTTTAATTGTACCT
CAACCTCATTATTTAACTAATATAGACAAAAATGTTGAGAAATATAAAAC
ACAACAATATAGATATGTACAAATCACAGGGCAGTGTGGCTCATCAGTAA
AGGTGAAAAAGAGAAAAAAAAATTAAAATTAAATAATGCTAGTACAAACT
GAGGGGCCTAACGTATAATCAATTGTCCTTGTAATCTTTCGTCTGATTGT
AATCCTTTGTAGCCAGCGCTTCAAAGCCACCATCTGGTCTCTTCTCCAGT
GAATAGGGCATATAGGTTCCAAAAATTCTATCCCACATCACGAAGAATGG
TTGTGCAAAGTTGTATTTGCTCCCATAAAGTTGATGGTGGATATCATGAT
AGGCAGTGTTGTTTTTGAAGAGGGGGGGGAAAAGGTTTCCAGGAAGCCAT
AATCCACAGTGGTCATCCACTGTTTTGATGGTGGCAAAGGAAAAGAAGAA
TATGGAGACTCGGGGAGACATACCGGAAACGAGAAAAGATAAGGCTCCGC
CAATTGTGTCATTAAGAAGCCCCTCAATGGGGTGATTATACAAAGCTCCA
AATGCATAGGGGACAACAAGGCGGTGATGTAGAGAATGGATGTGTCAATA
CAAAAACTTGTTGTGGTGCATGTACCTGTGCATAAAATACTGCCATGTAT
CCATAACCAACA
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