CF836750

Overview
NameCF836750
Unique NameCF836750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2631 contig Csv1_Contig2631:1358..1973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_AQUAE (Tryptophan synthase beta chain 2 OS=Aquifex aeolicus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.381e-39
Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = -2
Query:  274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618
            +KM+TLGHDF+P PIHAGGLRYHG APL+  +Y LG ++A++  QTE F+ A+ FARTEGI+PAPE  HAI A I EAL+CKETGE KVIL  + GHG+FDL++Y+ YL G++ D
Sbjct:  320 IKMYTLGHDFVPSPIHAGGLRYHGDAPLVCKLYNLGYIDAVAYKQTEVFEAAVTFARTEGIVPAPESAHAIKAAIDEALKCKETGEEKVILFNLSGHGYFDLSAYDKYLHGELTD 434          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METMA (Tryptophan synthase beta chain 2 OS=Methanosarcina mazei GN=trpB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = -2
Query:  280 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKM 618
            +KM+TLGH  IP  IHAGGLRYHG +P++S +   GLMEA+S  Q E F  A+QFARTEGI+PAPE +HAI   I EAL  K+ GE KVIL  + GHGHFD+ASY+ Y  G++
Sbjct:  329 LKMYTLGHKHIPPAIHAGGLRYHGDSPIISKLCAEGLMEAVSYGQKEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALEAKQKGEEKVILFNLSGHGHFDMASYDKYFSGEL 441          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = -2
Query:  277 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMV 618
            +KM+TLGH  +P  IHAGGLRYHG +P++S +   GLMEA+S  Q E F  A+QFARTEGI+PAPE +HAI   I EAL  K+TGE K IL  + GHGHFD++SY+ Y  G+++
Sbjct:  329 LKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKYFSGELM 442          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  259 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVDLSFEE 618
            MKMHTLGH +   PIHAGGLRYHG+AP LS +   G++  ++  QTE F+ A  FA+TEGI+PAPE  HA+ A I  AL+ KE G+ +VIL  + GHG  DL  YE++L GK+ D   EE
Sbjct:  316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDLKGYEDFLDGKLEDYEPEE 435          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_THEGJ (Tryptophan synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trpB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = -2
Query:  274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618
            MKMHTLGH +   PIHAGGLRYHG+AP LS +   G+++ ++  QTE FQ A  FA+TEGIIPAPE  HAI   I  AL+ KE G  +VIL  + GHG  DL  YE+YL GK+ D
Sbjct:  316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSILINHGIVKPVAYHQTEVFQAAELFAKTEGIIPAPESAHAIKGVIDRALKAKEEGREEVILFNLSGHGLLDLKGYEDYLDGKLED 430          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_ARCFU (Tryptophan synthase beta chain 2 OS=Archaeoglobus fulgidus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = -2
Query:  274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618
            +KM+TLGHDFIP PIHAGGLRYHG AP L  + + G+++A ++ Q   F+  + FARTEGIIPAPE  HA+ A I EA++ +E  E KVI+    GHG  DL +Y++YL G++ D
Sbjct:  320 LKMYTLGHDFIPPPIHAGGLRYHGDAPTLCMLVKHGVIKARAVKQLPTFEAGLLFARTEGIIPAPETNHAVRAAIDEAIKARENNEEKVIVFGFSGHGLLDLQAYDDYLAGRLAD 434          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METTH (Tryptophan synthase beta chain 2 OS=Methanobacterium thermoautotrophicum GN=trpB2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.747e-30
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  280 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKM 618
            +KM+TLGHDF+P  +HAGGLRYHGM+P ++ +   G++ A ++PQ   F+  ++FA+ EG++PAPE  HAI+  I EA +C+ETGE K I+ +  GHG  DL  Y +YL+GK+
Sbjct:  317 LKMYTLGHDFVPPSVHAGGLRYHGMSPQVALLVREGVINARAVPQHTIFESGVKFAKAEGVVPAPETCHAISVAIDEARKCRETGEEKTIVISFSGHGLLDLKGYGDYLEGKI 429          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRKO (Tryptophan synthase beta chain 2 OS=Pyrococcus kodakaraensis GN=trpB2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618
            MKMHTLGH +   PIHAGGLRYHG+AP LS +   G+++ ++  Q E FQ A  FA+TEGI+PAPE  HAI   I  AL  K  G  +VIL  + GHG  DL  YE+YL GK+ D
Sbjct:  316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSVLINHGIVKPVAYHQNEVFQAAHLFAKTEGIVPAPESAHAIKGAIDRALEAKREGREEVILFNLSGHGFLDLKGYEDYLDGKLED 430          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = -2
Query:  274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618
            +KM+TLGH +   PIHAGGLRYHG+AP LS +   G+++ ++  QTE F+ A+ FA+ EGI+PAPE  HA+ A I +AL  K  GE  VIL  + GHG  DL  YE+YL+GK+ D
Sbjct:  327 IKMYTLGHTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDYLEGKLED 441          
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRFU (Tryptophan synthase beta chain 2 OS=Pyrococcus furiosus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = -2
Query:  226 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVDLSFEEKKIQESLDKIP 618
            +KMHTLGH +   PIHAGGLRYHG+AP LS +   G+++ I+  QTE F+ A  FA+ EGI+PAPE  HAI ATI +A+  K  G+  VIL  + GHG  DL  YE YL+G++ D   ++  I   L+  P
Sbjct:  316 LKMHTLGHRYHVPPIHAGGLRYHGVAPTLSVLVNNGIVKPIAYHQTEVFEAAALFAKLEGIVPAPESAHAIKATIDKAIEAKREGKEIVILFNLSGHGLLDLHGYEEYLEGRLQDYEPKDLPISNPLNPKP 446          
The following BLAST results are available for this feature:
BLAST of CF836750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TRPB2_AQUAE3.381e-3962.61Tryptophan synthase beta chain 2 OS=Aquifex aeolic... [more]
TRPB2_METMA1.244e-3359.29Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB2_METAC1.244e-3357.02Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB_THEON1.288e-3053.33Tryptophan synthase beta chain OS=Thermococcus onn... [more]
TRPB_THEGJ1.288e-3056.52Tryptophan synthase beta chain OS=Thermococcus gam... [more]
TRPB2_ARCFU1.682e-3053.04Tryptophan synthase beta chain 2 OS=Archaeoglobus ... [more]
TRPB2_METTH3.747e-3049.56Tryptophan synthase beta chain 2 OS=Methanobacteri... [more]
TRPB2_PYRKO2.428e-2953.91Tryptophan synthase beta chain 2 OS=Pyrococcus kod... [more]
TRPB_PYRHO4.142e-2952.17Tryptophan synthase beta chain OS=Pyrococcus horik... [more]
TRPB2_PYRFU4.142e-2948.85Tryptophan synthase beta chain 2 OS=Pyrococcus fur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03I02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836750 ID=CF836750; Name=CF836750; organism=Citrus sinensis; type=EST; length=619bp
TTTTTTTTTTTTCTTTTATGGTATTACAAAACACTCACCACCAATTTTAT
TATACCAATGCATTTGATTACAGAACTTGGAATCTATTTTATTATACAAA
CTCCCCAAAGTTTCTCGGATAATGAACAACGGAAGTACAACGAGAAAAAA
TTATGATCTTTCTGTTCTGAATTTCATCCGACATTGTGTATCAGTCATTT
GTTCTTCACTTCATGCAATCACTTGAGGAATTTTGTCCAGTGACTCTTGT
ATTTTCTTCTCTTCAAACGACAAGTCAACCATCTTTCCTTGCAAGTAATT
CTCATAAGAAGCAAGGTCAAAATGGCCATGGCCACACATTGCCGTCAGAA
TAACCTTTGCTTCTCCAGTTTCCTTACAACGGAGGGCTTCCCTGATGGTG
GCTGCAATTGCATGAGTCGGTTCTGGCGCCGGTATTATCCCTTCAGTTCT
AGCAAATTGTATAGCACCTTGAAAGCACTCAGTCTGAGGAATTGAAATTG
CTTCCATGAGGCCTAATTCATAGACATGTGATAATAATGGTGCCATACCA
TGGTAACGTAATCCTCCAGCATGAATTGGATCGGGAATGAAGTCGTGCCC
AAGTGTATGCATCTTCATC
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