CF836750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_AQUAE (Tryptophan synthase beta chain 2 OS=Aquifex aeolicus GN=trpB2 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.381e-39 Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = -2 Query: 274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618 +KM+TLGHDF+P PIHAGGLRYHG APL+ +Y LG ++A++ QTE F+ A+ FARTEGI+PAPE HAI A I EAL+CKETGE KVIL + GHG+FDL++Y+ YL G++ D Sbjct: 320 IKMYTLGHDFVPSPIHAGGLRYHGDAPLVCKLYNLGYIDAVAYKQTEVFEAAVTFARTEGIVPAPESAHAIKAAIDEALKCKETGEEKVILFNLSGHGYFDLSAYDKYLHGELTD 434
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METMA (Tryptophan synthase beta chain 2 OS=Methanosarcina mazei GN=trpB2 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33 Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = -2 Query: 280 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKM 618 +KM+TLGH IP IHAGGLRYHG +P++S + GLMEA+S Q E F A+QFARTEGI+PAPE +HAI I EAL K+ GE KVIL + GHGHFD+ASY+ Y G++ Sbjct: 329 LKMYTLGHKHIPPAIHAGGLRYHGDSPIISKLCAEGLMEAVSYGQKEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALEAKQKGEEKVILFNLSGHGHFDMASYDKYFSGEL 441
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33 Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = -2 Query: 277 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMV 618 +KM+TLGH +P IHAGGLRYHG +P++S + GLMEA+S Q E F A+QFARTEGI+PAPE +HAI I EAL K+TGE K IL + GHGHFD++SY+ Y G+++ Sbjct: 329 LKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKYFSGELM 442
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30 Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = -2 Query: 259 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVDLSFEE 618 MKMHTLGH + PIHAGGLRYHG+AP LS + G++ ++ QTE F+ A FA+TEGI+PAPE HA+ A I AL+ KE G+ +VIL + GHG DL YE++L GK+ D EE Sbjct: 316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDLKGYEDFLDGKLEDYEPEE 435
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_THEGJ (Tryptophan synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trpB PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30 Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = -2 Query: 274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618 MKMHTLGH + PIHAGGLRYHG+AP LS + G+++ ++ QTE FQ A FA+TEGIIPAPE HAI I AL+ KE G +VIL + GHG DL YE+YL GK+ D Sbjct: 316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSILINHGIVKPVAYHQTEVFQAAELFAKTEGIIPAPESAHAIKGVIDRALKAKEEGREEVILFNLSGHGLLDLKGYEDYLDGKLED 430
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_ARCFU (Tryptophan synthase beta chain 2 OS=Archaeoglobus fulgidus GN=trpB2 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = -2 Query: 274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618 +KM+TLGHDFIP PIHAGGLRYHG AP L + + G+++A ++ Q F+ + FARTEGIIPAPE HA+ A I EA++ +E E KVI+ GHG DL +Y++YL G++ D Sbjct: 320 LKMYTLGHDFIPPPIHAGGLRYHGDAPTLCMLVKHGVIKARAVKQLPTFEAGLLFARTEGIIPAPETNHAVRAAIDEAIKARENNEEKVIVFGFSGHGLLDLQAYDDYLAGRLAD 434
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_METTH (Tryptophan synthase beta chain 2 OS=Methanobacterium thermoautotrophicum GN=trpB2 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.747e-30 Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = -2 Query: 280 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKM 618 +KM+TLGHDF+P +HAGGLRYHGM+P ++ + G++ A ++PQ F+ ++FA+ EG++PAPE HAI+ I EA +C+ETGE K I+ + GHG DL Y +YL+GK+ Sbjct: 317 LKMYTLGHDFVPPSVHAGGLRYHGMSPQVALLVREGVINARAVPQHTIFESGVKFAKAEGVVPAPETCHAISVAIDEARKCRETGEEKTIVISFSGHGLLDLKGYGDYLEGKI 429
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRKO (Tryptophan synthase beta chain 2 OS=Pyrococcus kodakaraensis GN=trpB2 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29 Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = -2 Query: 274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618 MKMHTLGH + PIHAGGLRYHG+AP LS + G+++ ++ Q E FQ A FA+TEGI+PAPE HAI I AL K G +VIL + GHG DL YE+YL GK+ D Sbjct: 316 MKMHTLGHTYYVPPIHAGGLRYHGLAPTLSVLINHGIVKPVAYHQNEVFQAAHLFAKTEGIVPAPESAHAIKGAIDRALEAKREGREEVILFNLSGHGFLDLKGYEDYLDGKLED 430
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29 Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = -2 Query: 274 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVD 618 +KM+TLGH + PIHAGGLRYHG+AP LS + G+++ ++ QTE F+ A+ FA+ EGI+PAPE HA+ A I +AL K GE VIL + GHG DL YE+YL+GK+ D Sbjct: 327 IKMYTLGHTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDYLEGKLED 441
BLAST of CF836750 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRFU (Tryptophan synthase beta chain 2 OS=Pyrococcus furiosus GN=trpB2 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.142e-29 Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = -2 Query: 226 MKMHTLGHDFIPDPIHAGGLRYHGMAPLLSHVYELGLMEAISIPQTECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVILTAMCGHGHFDLASYENYLQGKMVDLSFEEKKIQESLDKIP 618 +KMHTLGH + PIHAGGLRYHG+AP LS + G+++ I+ QTE F+ A FA+ EGI+PAPE HAI ATI +A+ K G+ VIL + GHG DL YE YL+G++ D ++ I L+ P Sbjct: 316 LKMHTLGHRYHVPPIHAGGLRYHGVAPTLSVLVNNGIVKPIAYHQTEVFEAAALFAKLEGIVPAPESAHAIKATIDKAIEAKREGKEIVILFNLSGHGLLDLHGYEEYLEGRLQDYEPKDLPISNPLNPKP 446 The following BLAST results are available for this feature:
BLAST of CF836750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836750 ID=CF836750; Name=CF836750; organism=Citrus sinensis; type=EST; length=619bpback to top |