CF836755

Overview
NameCF836755
Unique NameCF836755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:17..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.705e-77
Identity = 141/159 (88.68%), Postives = 146/159 (91.82%), Query Frame = -2
Query:  250 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 726
            MAEQTEKAFLKQPKVFL+S            GNRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.200e-76
Identity = 141/159 (88.68%), Postives = 143/159 (89.94%), Query Frame = -2
Query:  250 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 726
            MAEQTEKAFLKQPKVFLS+            GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.486e-76
Identity = 140/158 (88.61%), Postives = 143/158 (90.51%), Query Frame = -2
Query:  253 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 726
            MAEQTEKAFLKQPKVFLSS            GNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.328e-73
Identity = 135/159 (84.91%), Postives = 140/159 (88.05%), Query Frame = -2
Query:  250 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 726
            MAEQTEKAFLKQPKVFLSS            GNRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.683e-73
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = -2
Query:  250 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 726
            MAEQTEKAFLKQPKVFLSS            GNRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.806e-72
Identity = 134/159 (84.28%), Postives = 140/159 (88.05%), Query Frame = -2
Query:  250 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 726
            MAEQTEKAFLKQPKVFLSS            GNRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.239e-52
Identity = 105/158 (66.46%), Postives = 125/158 (79.11%), Query Frame = -2
Query:  256 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 726
            MAEQTEKAF KQ  V                G+RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.137e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = -2
Query:  259 QTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 717
            QTE+A+ KQP +F +               R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.097e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = -2
Query:  259 QTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 717
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CF836755 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.097e-47
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = -2
Query:  259 QTEKAFLKQPKVFLSSXXXXXXXXXXXXGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 717
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
The following BLAST results are available for this feature:
BLAST of CF836755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES1.705e-7788.6840S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN4.200e-7688.6840S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE5.486e-7688.6140S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH3.328e-7384.9140S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH9.683e-7384.3840S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH4.806e-7284.2840S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE3.239e-5266.4640S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA3.137e-4759.0940S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT4.097e-4759.7440S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE4.097e-4759.7440S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03I07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836755 ID=CF836755; Name=CF836755; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTCCTAAGCAATAACAGAGTCACTACGCATTCATCCC
ATTGAACAAATATGGAATAAAACAATGTCATAACCAAACCAAAGAAAATA
CTAACAAGCAAAAGGAAAAATTAACTTCTCTAGAAAATATATATTAGGAC
ATAACAGGATTTAATTCCCAATGCAAAAATCCAAATAACAAAGTCCCATG
GAACAAAAGTAGCAAAAATTTAATGTTGGAAACAGCCGACTCCAACTCAC
ATCGCCGTGAATGCCTTCTTTGCACCACCAGAAGACCCAGCAGGTATCAC
TTTCAAGACATTAAACCTGACCGTCTTTGACAAAGGCCTGCACTGGCCAA
TGATAACATGGTCTCCCTCTTTCACACGGAAACAAGGTGAGATGTGTGCT
GGAATGTTAGAGTGCCTCTTCTCATACCTCTGATATTTCTTCACAAAGTG
AAGGTAGTTACGCCTAACGATGATGGTTCTGTTCATCTTAGCACTGTGGC
AAGTACCAGCAAGGATACGACCCCTGATGGAAACAGTGCCGGTGAACGGA
CACTTCTTATCAATGTAAGTCCCTTCAATTGCCTCTCTGGGAGTCTTGAA
TCCCAAGCCTATGCTCTTCCAGAATCGATTCCCTCCCTTTCCTGGCCTCT
TTCCTTTTCCTGCCTTCTTCGAGCTGAGAAACACCTTGGGCTGCTTCAAA
AACGCCTTCTCGGTCTGCTCCGCCATGGCTGGATTTCGGGGCTGAGTTGT
TGAGGATGATGAACGCACTGGGCGGAGGTGGCTAACACAATGCAGAAAA
back to top