CF836758

Overview
NameCF836758
Unique NameCF836758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5993 contig Csv1_Contig5993:3..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836758 vs. ExPASy Swiss-Prot
Match: KPYA_RICCO (Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.665e-73
Identity = 135/152 (88.82%), Postives = 147/152 (96.71%), Query Frame = -3
Query:  400 PDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDVLQSIQVMNVP 855
            P+KAL VLRSVS+RIEKWWREEK HEAMELP +GS++++SISEEICNSAAKMANNL VDALFVYTK GHMASLLSRCRPDCPIFAFT+TTSVRRRLNL+WGLIPFRLSF+DDMESNLN+TFSLLKARGMIKSGDLVIAVSD+LQSIQVMNVP
Sbjct:  432 PEKALAVLRSVSVRIEKWWREEKHHEAMELPAIGSTYSDSISEEICNSAAKMANNLGVDALFVYTKDGHMASLLSRCRPDCPIFAFTTTTSVRRRLNLQWGLIPFRLSFADDMESNLNKTFSLLKARGMIKSGDLVIAVSDMLQSIQVMNVP 583          
BLAST of CF836758 vs. ExPASy Swiss-Prot
Match: KPYA_TOBAC (Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.844e-73
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = -3
Query:  400 PDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDVLQSIQVMNVP 855
            P+KALTVLRSVSLRIE+ WRE+KRHE +ELP + SSF++SISEEICNSAAKMANNLEVDALFVYTK GHMASLLSRCRPDCPIFAFT+TTSVRRRLNL+WGL+PFRLSFSDDMESNLN+TFSLLKARGMIKSGDL+IAVSD+LQSIQVMNVP
Sbjct:  442 PEKALTVLRSVSLRIERMWREQKRHEVIELPSIASSFSDSISEEICNSAAKMANNLEVDALFVYTKNGHMASLLSRCRPDCPIFAFTTTTSVRRRLNLQWGLMPFRLSFSDDMESNLNKTFSLLKARGMIKSGDLIIAVSDMLQSIQVMNVP 593          
BLAST of CF836758 vs. ExPASy Swiss-Prot
Match: KPYG_TOBAC (Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = -3
Query:  418 PDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDVLQSI 855
            P KA+ V+  V+LR E         ++   P   +++   + E     ++ MAN L    + V+T+TG MA +LS  RP   +FAFT+   V++RL L  G++P  + FS D E   +R   LL ++ ++K G  V  V    Q I
Sbjct:  407 PLKAVKVMHIVALRTES-----SLQKSTSSPSQSAAYKSHMGEMFAFHSSSMANTLSTP-IIVFTRTGSMAIILSHNRPSSTVFAFTNNERVKQRLALYHGVVPIYMEFSSDAEETFSRAIKLLLSKSLVKDGQYVTLVQSGAQPI 546          
BLAST of CF836758 vs. ExPASy Swiss-Prot
Match: KPYG_RICCO (Pyruvate kinase isozyme G, chloroplastic (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = -3
Query:  418 PDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDVLQSI 855
            P KA+ V+ +V+LR E              P    ++   + E     A  MAN L    + V+T+TG MA LLS  +P   IFAFT+   +++RL+L  G++P  + FS D E   +R   LL  +G++  G+ V  V    Q I
Sbjct:  264 PLKAVRVMHTVALRTES------SSPVNTTPPAQGAYKGHMGEMFAFHATIMANTLNTP-IIVFTRTGSMAVLLSHYQPASTIFAFTNEERIKQRLSLYRGVMPIYMEFSSDAEETFSRALQLLLNKGLLVEGEHVTLVQSGAQPI 402          
The following BLAST results are available for this feature:
BLAST of CF836758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KPYA_RICCO1.665e-7388.82Pyruvate kinase isozyme A, chloroplastic OS=Ricinu... [more]
KPYA_TOBAC4.844e-7388.16Pyruvate kinase isozyme A, chloroplastic OS=Nicoti... [more]
KPYG_TOBAC2.287e-1432.19Pyruvate kinase isozyme G, chloroplastic OS=Nicoti... [more]
KPYG_RICCO1.639e-1232.88Pyruvate kinase isozyme G, chloroplastic (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03I09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836758 ID=CF836758; Name=CF836758; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTAGAAAGAAAACTGAAGCTGATTGATTAAGCAAAATAC
AACACAGTACGCGAATACCGTTCACAGATTATAGAGTGAAGAAGGAAAAT
TACAGCTCTGCCTATAAAGTAAATTCTGCGTGCTAAGCTAAACAAAATAC
AATCTGATCACCAGCAGTTTAAACCAGAGAGGCTCAAATGAAATGAGCTG
CCCCTGACTGCTCGCTCATTGTCAAAGCAAAATCAGTTGCAGTCTCAAAC
ATTCTGCAGTAAACATTCAAAACAAGATCGAATTCATGACTACCTGCTGT
TTGCTTCGAAGAAACAATCTCTTTCTAGTATAAGGAACACTATTGCACAA
GCTATTGGGGAAGTGCTGAAACAACAATCTTGATCTCACTAAGATTTCAA
GGAACGTTCATGACTTGGATTGACTGCAACACGTCTGAAACGGCAATGAC
AAGATCACCTGATTTGATCATTCCCCTGGCCTTGAGCAATGAGAATGTTC
TATTAAGGTTGCTTTCCATATCATCAGAGAAGCTCAAGCGGAATGGTATC
AGACCCCACCGTAGATTCAGACGTCTTCGCACAGATGTTGTACTAGTGAA
GGCAAAGATTGGGCAGTCAGGTCGGCATCTAGACAAGAGAGACGCCATGT
GGCCAGTCTTTGTATATACAAAAAGTGCATCCACCTCTAGATTATTTGCC
ATCTTGGCAGCAGAATTACAAATCTCTTCCGAAATACTCTCTGCAAAAGA
AGATCCTACATCTGGGAGTTCCATAGCTTCATGGCGCTTCTCTTCCCTCC
ACCATTTCTCAATTCTGAGACTGACACTCCTGAGCACAGTCAATGCCTTA
TCTGGGA
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