CF836759

Overview
NameCF836759
Unique NameCF836759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.331e-36
Identity = 90/234 (38.46%), Postives = 134/234 (57.26%), Query Frame = -1
Query:  191 GLATQLVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKP-HATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 865
            G  T LV+      G+ L F NDLD+ +    +YFTDSS+ +QRR ++  I+     GR+L+Y+  TKEVT+L++ L FANG+ L  D   +L+AET+  RI R  + G N G  D F + LPGFPDN+R +S+G +WVA+ A +    F  L  L+   W+ K + KL   F Q   +L+   P ++  I+L E G  +    D  G   +++SE  E DG L++GS   P++
Sbjct:  180 GEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKL---FSQ--DVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYL 408          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35
Identity = 88/223 (39.46%), Postives = 127/223 (56.95%), Query Frame = -1
Query:  179 GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGMYN 832
            GQ L F NDL + +    IYFTDSS+ +QRR F+  ++ G   GRLL+Y+  TKEV +L+ GL F NGV LS    F+L+ ET+  RI R+++ G   G  D+F E +PG PDN+R +S+G +WVA+   +    F  L  L+   W+ + + KL LS   +  LL      +  ++LSE G       D  G T+ ++SE  E +G L++GS   PFI   N
Sbjct:  193 GQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKL-LSQETVTKLL---PKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLN 411          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.143e-35
Identity = 88/224 (39.29%), Postives = 131/224 (58.48%), Query Frame = -1
Query:  191 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWV---ALHAKKGLFGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 844
            T   G+ + F NDL +      IYFTDSS+ +QRR ++  ++ G   GRLL+Y+  TKEV +LL  L F NGV LS    F+L+ E +  RI RF++ G   G  DVF E LPGFPDN+R++S+G +WV   A+ A  G F  L  L+   +L K + KL   F Q  +++     ++  ++LS+ G  L  L D EG+ ++++SE  E  G L++GS   P++
Sbjct:  189 TPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPG-FSMLDFLSERPFLKKVIFKL---FSQ-ETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.037e-34
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = -1
Query:  191 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVA---LHAKKGLFGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 844
            T   G+ + F NDL I      IYFTDSS+ +QRR ++  ++ G   GRLL+Y+  TKEV +LL  L F NGV LS +  F+L+AET+  RI R ++ G   G  D+F E +PGFPDN+R +S+G +WVA   + A  G F  L  L+   ++ + + KL   F Q  +++     ++  +++S+ G     L D +G+ ++++SE  E DG L++GS   PFI
Sbjct:  150 TPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPG-FSMLDFLSDKPFIKRMIFKL---FSQ-ETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 368          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 84/223 (37.67%), Postives = 129/223 (57.85%), Query Frame = -1
Query:  191 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 844
            T   G+ + F NDL + +    IYFTDSS+ +QRR ++  ++ G   GRLL+Y+  T+EV +LL  L F NGV LS    F+L+AET+  RI R ++ G   G  D+F E +PGFPDN+R +S+G +WV +   +    F  L  L+   W+ + + KL   F Q  +++     ++  ++LS+ G     L D +G   ++ISEV E DG L++GS   PF+
Sbjct:  190 TPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKL---FSQ-ETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFL 408          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.926e-34
Identity = 85/220 (38.64%), Postives = 125/220 (56.82%), Query Frame = -1
Query:  191 AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 835
            AG+ L F NDLD+ +    +YFTDSS+ +QRR FM  I+     GR+L+Y+  TKEV ++++ L F NG+ L  D   +L+AET+  RI R  + G N G  D F E LPGFPDN+R +S+G +WVA+ A +    F  L  L+   WL K + KL   F Q  +LL     ++  ++L   G  +    D +G   ++ SE  E  G L++GS   P++
Sbjct:  192 AGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKL---FSQ-DTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYL 407          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 83/224 (37.05%), Postives = 131/224 (58.48%), Query Frame = -1
Query:  191 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVA---LHAKKGLFGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFI 844
            T   G+ + F NDL +      IYFTDSS+ +QRR ++  ++     GRLL+Y+  TKEV +LL  L F NGV LS +  F+L+AET+  RI R ++ G   G  D+F E +PGFPDN+R +S+G +WVA   + A  G F  L  L+   ++ + + K+   F Q  +++     ++  +++S+ G     L D +G+ ++++SE  E DG L++GS   PFI
Sbjct:  189 TPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPG-FSMLDFLSDKPFIKRMIFKM---FSQ-ETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 407          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.780e-30
Identity = 79/231 (34.20%), Postives = 125/231 (54.11%), Query Frame = -1
Query:  185 GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEV--LEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGM 868
            GGLAT++     G+P +F + LD+D   GV+YFT  S+ F   Q + ++   D TG+L KY+ +TK VT+L++GL+ + G A+S D +F+L+++ +   I R+W+ GP +G  + F      PDN+ R  S G FWVA    K                             ++V   P  +A+K++  GEVL+   L+D  G TL  +SEV E +G L++G++  PF G+
Sbjct:  127 GGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWVASVVNK-----------------------------IIVPTNP--SAVKVNSNGEVLQTIPLKDKFGDTL--LSEVNEFEGNLYIGTLTGPFAGI 324          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.365e-29
Identity = 77/231 (33.33%), Postives = 123/231 (53.25%), Query Frame = -1
Query:  185 GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEV--LEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGM 868
            GGLA ++     G+P  F + LD+D   GV+YFT  S++F  R  + ++ + D TG+  KY+ + K VT+L++GL+ + G A+S D +F+L+ + +   I R+W+ G  +G  + F      PDN+ R  S G FWVA            ++NS  G T                    + +A+K+S  G+VL+   L+D  G TL  +SEV E  GQL++G++  PF G+
Sbjct:  129 GGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVAS-----------VVNSATGPT--------------------NPSAVKVSSAGKVLQTIPLKDKFGDTL--VSEVNEYKGQLYIGALFGPFAGI 326          
BLAST of CF836759 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 71/228 (31.14%), Postives = 118/228 (51.75%), Query Frame = -1
Query:  185 GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGM 868
            GG ATQL T   G P ++   + +D+  G++YFTD ST +  R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE  + +I+++WL GP  G  +V  ++P  P N++ N++G FWV+  + + L G +                           G+     IK  E G +LEV+            +++E DG L++G++    +G+
Sbjct:  132 GGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM--------------------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI 330          
The following BLAST results are available for this feature:
BLAST of CF836759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_SALSA6.331e-3638.46Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_CHICK4.104e-3539.46Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_BOVIN9.143e-3539.29Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_RAT2.037e-3438.39Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_HUMAN3.474e-3437.67Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_DANRE5.926e-3438.64Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_MOUSE2.252e-3337.05Adipocyte plasma membrane-associated protein OS=Mu... [more]
STS1_ARATH6.780e-3034.20Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH3.365e-2933.33Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE3.720e-2831.14Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03I10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836759 ID=CF836759; Name=CF836759; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTTGAGCAAGGGTTTGACCGTTTGAGTCTATCACCCT
TCTATAAGGACTAAATAAATGTTCATGAACAAACCATTCACAATCTAATA
ATCAAAACGCAGGGGTATAAGTTAACTTCCCTATTACATATAAAAGGATG
GAAAGTACGTAGTTCAATTTCGAAACCTATTGTACATGCCAATAAAAGGC
ATTAGCACTGATCCCATCCATAACTGGCCATCCTTCTCTTCCACTTCACT
AATAAAACTCAAAGTTTTTCCTTCACAATCTTCTAAAACCTCCAAGACTT
CTCCCTTTTCACTAAGCTTGATAGCAGTTGCGTGGGGCTTCCCTCCTACC
AACAGTGAATGCAGTTGCCTAAAGCTTAGTGGAAGTTTCAACAATGTCTT
CCCCAGCCAAGAATTCAGAAGAATCAACTTTCCAAAAAGTCCTTTCTTTG
CATGCAAGGCAACCCAAAACTCCCCATTTGAATTACTTCGGACATTGTCC
GGAAATCCAGGGAGCTCGGCAAAAACATCCTGCTTTCCACTGTTAGGACC
ATGAAGCCAAAATCTTAGAATCCGACAGTTCGAAGTTTCAGCTATTAGTA
TAAAGGTGCGGTCTCTGCTCAATGCTACTCCATTTGCAAATGCAAGGCCT
TGTAGTAAGATTGTTACTTCTTTGGTTGTTTTTTCATACTTCAATAACCT
GCCTGTCTTATCTCCACTCAAGATTGATGACATGAATTGCCTTCTCTGGA
AACTCGTGCTTGAATCTGTGAAGTAGATCACACCTTTATGTTCATCGATG
TCCAAATCATTGGTAAAGCGCAATGGCTGACCTGCAGCTTCTGTGACTAG
TTGAGTGGCTAAACCACC
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