CF836760

Overview
NameCF836760
Unique NameCF836760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1194 contig Csv1_Contig1194:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.691e-37
Identity = 81/184 (44.02%), Postives = 117/184 (63.59%), Query Frame = 3
Query:  243 GPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTT--SQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 788
            GPE+ AFD  G G YTGV+ G+ILK+   E G+ +FA  T  S    C       +   CGRP GI F++KTGDLY+ADA LG  V+ P GGLAT++     G+P +F + LD+D   GV+YFT  S+ F   Q + ++   D TG+L KY+ +TK VT+L++GL+ + G A+S D +F+L+++
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYL-PETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQ 220          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.067e-35
Identity = 76/184 (41.30%), Postives = 114/184 (61.96%), Query Frame = 3
Query:  243 GPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHI--CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 788
            GPE+ AFD  G G YTGV  G+ILK+   + G+ +FA  T+  K  +   A    ++  CGRP GI F+ KTGDLY+ADA LG  V+   GGLA ++     G+P  F + LD+D   GV+YFT  S++F  R  + ++ + D TG+  KY+ + K VT+L++GL+ + G A+S D +F+L+ +
Sbjct:   40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKK-GYVDFAQITNSSKSSLCDGALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQ 222          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  246 PESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 788
            P S  FD    G YT V DGR++K++G   G+ +FA  +    +     + D E   +CGR   I ++ +   LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE
Sbjct:   43 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 225          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  246 PESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 788
            P S  FD    G YT V DGR++K++G   G+ +FA  +    +     + D E   +CGR   I ++ +   LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE
Sbjct:   41 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 223          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 3
Query:  216 KIIQVTGALGPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTS--QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD-SSTSFQRRQFMSSIL-SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 788
            KI   + +  P +  FD    G YT V DGR++K++G   G+T+FA  +    +  C     P+   +CGR   I +D K   +YI D +    VVG EGG ATQL T   G P ++   + +D+  G++YFTD SS      + +  I+ + D+TGRL+KY+ +TKE T+LL+ L    G  +S D +F+++AE
Sbjct:   37 KIFIESPSYAPNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTDPEKRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAE 231          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  240 LGPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT---EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 791
            +GPES+A    GD  YTG ADG+I+K +G  +      + T  +  C    + + EH CGRPLGIR     G L++ADAYLG   V P  G    LV+     AG+ L F NDLD+ +    +YFTDSS+ +QRR FM  I+     GR+L+Y+  TKEV ++++ L F NG+ L  D   +L+AET
Sbjct:   99 VGPESLA--NIGDVFYTGTADGKIVKIEGRNI----HVLATIGKPPCG---SREHEHTCGRPLGIRVGPN-GTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAET 275          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.695e-29
Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  240 LGPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 791
            +GPESIA    GD  YTG ADG+I+K +G  +      +    +  C    + + E  CGRPLGIR     G L++ADAYLG   V P  G  T LV+      G+ L F NDLD+ +    +YFTDSS+ +QRR ++  I+     GR+L+Y+  TKEVT+L++ L FANG+ L  D   +L+AET
Sbjct:   99 VGPESIA--NFGDLIYTGTADGKIVKIEGKSIT----VIARLGKPPC--DGSREQEPSCGRPLGIRVGPN-GTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAET 276          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.214e-29
Identity = 85/202 (42.08%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  195 NNNLEGSKIIQVTGALGPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLV---TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 791
            NN L+ ++ +     +GPESI     GD  +TG ADG+ILK +  E       V T  R        P+ E  CGRPLGIR       L++ADAY G   V P  G    LV   T   GQ L F NDL + +    IYFTDSS+ +QRR F+  ++ G   GRLL+Y+  TKEV +L+ GL F NGV LS    F+L+ ET
Sbjct:   84 NNKLQKAERLWENQLVGPESIV--NIGDVLFTGTADGKILKIEDGE-------VQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLET 275          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 80/202 (39.60%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  195 NNNLEGSKIIQVTGALGPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGP---EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 791
            N  L  ++ +     +GPESIA    GD  +TG ADGR++K +  E       + T  R         D E +CGRPLGIR     G L++ADAY G   V P   E  L     T   G+ + F NDL + +    IYFTDSS+ +QRR ++  ++ G   GRLL+Y+  T+EV +LL  L F NGV LS    F+L+AET
Sbjct:   85 NTKLRQAERLFENQLVGPESIAHI--GDVMFTGTADGRVVKLENGE-------IETIARFGSGPCKTRDDEPVCGRPLGIRAGPN-GTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAET 276          
BLAST of CF836760 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 77/186 (41.40%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  243 GPESIAFDPNGDGPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLV---TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 791
            GPESI     GD  +TG ADGR++K +  E       + T  R         D E  CGRPLGIR     G L++ DAY G   V P+      L+   T   G+ + F NDL I      IYFTDSS+ +QRR ++  ++ G   GRLL+Y+  TKEV +LL  L F NGV LS +  F+L+AET
Sbjct:   61 GPESIV--NIGDVLFTGTADGRVVKLENGE-------IETIARFGSGPCKTRDDEPTCGRPLGIRVGPN-GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAET 236          
The following BLAST results are available for this feature:
BLAST of CF836760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STS1_ARATH1.691e-3744.02Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH2.067e-3541.30Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE3.649e-3238.80Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA3.649e-3238.80Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO2.002e-3036.41Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
APMAP_DANRE5.825e-3042.25Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_SALSA1.695e-2942.25Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_CHICK2.214e-2942.08Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_HUMAN2.072e-2739.60Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_RAT1.754e-2641.40Adipocyte plasma membrane-associated protein OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03I10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836760 ID=CF836760; Name=CF836760; organism=Citrus sinensis; type=EST; length=791bp
TTGAAACTCTTCCTCTTTTAATCAGTAGAGATAAGAAGAAAGTCAGAAAC
GGCCCCCAAGAAGCCATGAACAGGAACAAAAAGATCGTAGTATCTGCGGC
AATAGTAATAGCAATAGTCTCTGTAATTATATCAATCAACCAAACAAATA
CTACTCTGAGAAACCTCTTCTGTGCGCCGTGCATAGAAGGATCCAATAAT
AATCTGGAAGGTAGCAAGATCATCCAAGTCACTGGTGCTCTGGGTCCTGA
GAGCATTGCTTTCGATCCCAATGGAGACGGCCCCTACACTGGCGTCGCTG
ATGGTCGTATTCTTAAATGGCAAGGTGATGAACTTGGTTGGACTGAATTT
GCTGTCACCACTTCTCAAAGGAAGGAGTGTGTTCGACCATTTGCGCCAGA
CATTGAGCATATCTGTGGGAGGCCGTTAGGAATCCGATTTGATAAGAAAA
CAGGAGATCTCTACATTGCTGATGCCTACCTTGGTTTTCAAGTTGTAGGG
CCTGAAGGTGGTTTAGCCACTCAACTAGTCACAGAAGCTGCAGGTCAGCC
ATTGCGCTTTACCAATGATTTGGACATCGATGAACATAAAGGTGTGATCT
ACTTCACAGATTCAAGCACGAGTTTCCAGAGAAGGCAATTCATGTCATCA
ATCTTGAGTGGAGATAAGACAGGCAGGTTATTGAAGTATGAAAAAACAAC
CAAAGAAGTAACAATCTTACTACAAGGCCTTGCATTTGCAAATGGAGTAG
CATTGAGCAGAGACCGCACCTTTATACTAATAGCTGAAACT
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