CF836762

Overview
NameCF836762
Unique NameCF836762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:613..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.954e-48
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KG G GAEIIGTFV VY VF A DAKRSARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+NKD  WDD WIFWVGPF+GA LAAL+ Q+VIRAIPFK
Sbjct:  175 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.776e-48
Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KG G GAEI+GTFV VY VF A DAKRSARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+NKD  WDD WIFWVGPF+GA LAAL+ Q+VIRAIPFK
Sbjct:  175 KGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KGDG GAEI+GTF+ VY VF A DAKRSARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAI+FNK  GW+D WIFWVGPF+GA LAAL+ QVVIRAIPFK
Sbjct:  178 KGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KG G GAEIIGTFV VY VF A DAKRSARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+NKD  WDD WIFWVGPF+GA LAAL+ Q+VIRAIPFK
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFK 283
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.262e-47
Identity = 89/110 (80.91%), Postives = 97/110 (88.18%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KGDG GAEI+GTF+ VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+NKD  W+D WIFWVGPFVGA LAA++ QV+IRAIPFK
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFK 286
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.040e-47
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KG G GAEIIGTFV VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAIIFNKD  WDD W+FWVGPF+GA LAAL+  +VIRAIPFK
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFK 283
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KGDG GAEI+GTF+ VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+N+D  W+D WIFWVGPF+GA LAA++ QV+IRAIPFK
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 286
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.597e-47
Identity = 87/110 (79.09%), Postives = 96/110 (87.27%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KGDG GAEI+GTF+ VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+N+D  W D WIFWVGPF+GA LAA++ QV+IRAIPFK
Sbjct:  180 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 289
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 8.597e-47
Identity = 88/110 (80.00%), Postives = 96/110 (87.27%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KGDG GAEI+GTF+ VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+N+   WDD WIFWVGPF+GA LAA++ QVVIRAIPFK
Sbjct:  176 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285
[Close]
BLAST of CF836762 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.597e-47
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = -3 
Query:  336 KGDGFGAEIIGTFVFVYPVFFAPDAKRSARDFHVPILAPLPIGFAVFLVHLAPIPITGTGINPARSFGAAIIFNKDRGWDDPWIFWVGPFVGAGLAALFPQVVIRAIPFK 665
            KG G GAEIIGTFV VY VF A DAKR+ARD HVPILAPLPIGFAVFLVHLA IPITGTGINPARS GAAII+NKD  WDD W+FWVGPF+GA LAAL+  VVIRAIPFK
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283
The following BLAST results are available for this feature:
BLAST of CF836762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PIP14_ARATH5.954e-4883.64Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_ARATH7.776e-4882.73Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP2_PEA1.016e-4782.73Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP13_ARATH1.016e-4783.64Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_ORYSJ2.262e-4780.91Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ARATH5.040e-4781.82Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_MAIZE6.583e-4779.09Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE8.597e-4779.09Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ8.597e-4780.00Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_VICFA8.597e-4781.82Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03I12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836762 ID=CF836762; Name=CF836762; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTAAAAGTAATACAATTAAGTTTTGTCCATATTAT
TACCAAGATGACATTGCACCAATCCATAGCCATACAAATGTACAAAGGGA
CAGCGCCCACCTACTTAACCATGGGCCCATCCGTCATCATCATCCACCTC
TCTTCAAAATTAAAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACAAAA
AAGCAGGCCCAGGTCCAGCACCAGCAAATTTGAACAAAGGACTAATTAAT
ATTTTATAATACACATAAGCAAACCAGCAACAGCCATAAACAAATGCAGG
GGCAATCACAAACGTTGATGAAGCGATCAGCTTCATTTGAAGGGAATGGC
TCTGATCACAACTTGGGGGAACAAAGCTGCGAGTCCAGCTCCAACAAATG
GTCCCACCCAAAAAATCCAGGGGTCATCCCAACCGCGGTCCTTGTTGAAA
ATGATTGCAGCTCCAAAACTCCTCGCTGGGTTGATGCCAGTTCCGGTAAT
TGGGATAGGGGCCAAGTGAACCAAAAACACAGCGAACCCAATTGGCAAAG
GAGCCAAAATAGGAACATGAAAGTCCCTGGCGCTCCGTTTGGCATCAGGG
GCAAAAAAAACTGGGTAAACAAAAACAAAAGTACCAATAATCTCGGCACC
AAAACCATCACCCTTGG
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