CF836771

Overview
NameCF836771
Unique NameCF836771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9154 contig Csv1_Contig9154:390..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.545e-102
Identity = 174/186 (93.55%), Postives = 184/186 (98.92%), Query Frame = -2
Query:  251 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 808
            YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct:  295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.787e-98
Identity = 163/184 (88.59%), Postives = 180/184 (97.83%), Query Frame = -2
Query:  257 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 808
            YWKQVIKINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct:  295 YWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.787e-98
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = -2
Query:  251 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 808
            YWKQVIKINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK LD+Q+I+DNMQKPAFVFDGRN+++  KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct:  295 YWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 92/174 (52.87%), Postives = 123/174 (70.69%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 808
            YW+QVI +N+YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDEF  LD++RIY +M KPA++FDGR ++D  +L++IGF V +IGK
Sbjct:  295 YWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.047e-42
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  221 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD--ANKLREIGFIVYSIGKPLDPWLKDMPAVA*KRRQWACSC 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK           V+ KR  +A SC
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK----------KVSAKRIPFASSC 477          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.285e-42
Identity = 89/175 (50.86%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.903e-42
Identity = 89/175 (50.86%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.903e-42
Identity = 89/175 (50.86%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.538e-41
Identity = 88/175 (50.29%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CF836771 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.844e-41
Identity = 87/175 (49.71%), Postives = 119/175 (68.00%), Query Frame = -2
Query:  290 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 808
            YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   ++L+ IGF + +IGK
Sbjct:  299 YWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464          
The following BLAST results are available for this feature:
BLAST of CF836771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UGDH_SOYBN4.545e-10293.55UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH1.787e-9888.59Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH1.787e-9890.32Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME1.486e-4452.87UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK4.047e-4247.47UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN5.285e-4250.86UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB6.903e-4250.86UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN6.903e-4250.86UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT1.538e-4150.29UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_MOUSE5.844e-4149.71UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03I21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836771 ID=CF836771; Name=CF836771; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTTTGGTCGTAACGGGATTAAATCAAATAAAAATCAA
TAGGAGTCTTCTAACAAACAAGTAACAGACAGACACGTAGTATCATCAAA
TAAAGTGATAAGGCAAAAACATAGAGCCTCTTAGCAAAAGCAAAGGCACA
ACAAAAACTCATCAAAATATAGTAAAGAATTGAGCTGACTTCTTCATCAT
CTATAATCTGATGCCCGATGACACGAGCATGCCCATTGGCGTCTCTTTTA
TGCAACAGCCGGCATGTCCTTCAACCATGGATCGAGTGGCTTACCAATGG
AGTACACGATGAAACCAATCTCCCTCAACTTGTTGGCATCAACAACATTC
CTGCCATCAAACACGAATGCTGGTTTCTGCATGTTGTCATATATCCTCTG
ATAGTCAAGAGTCTTGAACTCATCCCACTCGGTCAAGATGCAGACACCAT
GGGCATCTTTTGTTGCTTCATAGGCATCCCAGACCACGCTCACTTGCTTC
ACCGTGGTGGGACTCATTGGCTGGAGGTGAAGAGGATGGTCCCAGTCAAA
CTTGTTCATTGTAAGGTCCCTCTGGATCTGGTCCTCGGTGACCTGTGGGT
CGTATATACTCAACCGAGCTTTGTCTCCCAAAAGCCCCTTGCAGACATCA
ATGGCTGGGGTCTCTCTGGTGTCACCTGTATCCTTCTTGAAGGCAAATCC
CAGAACGGCAATCTTCTTGTTTGAAACCGTGTTGAACATAGAGGCAACTA
CGCGGTTCACAAAACGGCTTTTCTGGTAATCATTGATCTTAATGACTTGT
TTCCAGTAC
back to top