CF837178

Overview
NameCF837178
Unique NameCF837178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.314e-83
Identity = 136/170 (80.00%), Postives = 148/170 (87.06%), Query Frame = -1
Query:  253 RTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFCH 762
            RTGC Y HGKF C TGDCG R+EC+GLGGA PATLAQF LHHGH D S+YGVSLVDGFN+P+TVTPHEGKGVCPVVGCRA+LL +CP  LQ RS  GHG VV CKS CEAF +DE CCRNHYNSPQTC+ SS+S+FFKHACPAT TYAHDSPSLMH+CSSPRELKVIFCH
Sbjct:   83 RTGCNYQHGKFYCATGDCGGRIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFCH 252          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.230e-37
Identity = 79/170 (46.47%), Postives = 105/170 (61.76%), Query Frame = -1
Query:  256 RTGCTYAH-GKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            R GCT+   G+  C TGDCG  L CNG GG  PATLA+ +L     +L  Y VSLVDG+N+ M++ P +G G C   GC +DL   CP  LQVRS  G  RVVACKS C AF + + CC   + +PQ+C+ +++S+ FK ACP   +YA+D P+ +  CS    + V FC
Sbjct:   74 RHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGP---ELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGK-RVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYI-VTFC 238          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 76/171 (44.44%), Postives = 97/171 (56.73%), Query Frame = -1
Query:  256 RTGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RTGC T A GKF C T DC   ++ CNG G   PATLA+F++  G      Y VSLVDGFN+PM+VTP  G G C    C A++ A CP  LQ +     G VVAC S C  FGT + CC    N+P+TC  +++SE F +ACP   +YA+D       C+      + FC
Sbjct:   77 RTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQ-DFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKG--SDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 72/170 (42.35%), Postives = 95/170 (55.88%), Query Frame = -1
Query:  256 RTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            R GC++ + G+ SC TGDCG  L CNG  GATPAT+ + +L    + +  Y VSLVDGFN P+++    G   C    C AD+   CP  L+VR     GRV  C+S C A G D  CC   Y SP  CR + FS  FK  CP   +YA+D  + ++ C + R L + FC
Sbjct:   82 RRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRD--REGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYL-ITFC 248          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 77/170 (45.29%), Postives = 97/170 (57.06%), Query Frame = -1
Query:  256 RTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RTGC + A G   CVTGDCG  L CNG GG  P TLA+F+L  G      Y VSLVDG+NV + + P  G G C   GC +DL A CP  L+V        VVACKS CE F TD+ CCR   + P+TC  + +S  FK+ACP   +YA+D  +    C+     ++ FC
Sbjct:   76 RTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTLV-GDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMD---QNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTG-ANYEITFC 238          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 73/172 (42.44%), Postives = 99/172 (57.56%), Query Frame = -1
Query:  256 RTGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQFSLH-HGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RT C T A GKFSC T DCG  ++ CNG G   PATL + ++  +G  D   Y VSLVDGFN+PM+V P  G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    ++P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:   44 RTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDY--YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 73/172 (42.44%), Postives = 99/172 (57.56%), Query Frame = -1
Query:  256 RTGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQFSLH-HGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RT C T A GKF+C T DCG  ++ CNG G   PATL + ++  +G  D   Y VSLVDGFN+PM+V P  G G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    N+P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:   78 RTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDY--YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 75/172 (43.60%), Postives = 95/172 (55.23%), Query Frame = -1
Query:  256 RTGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQFSL-HHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RT C T A GKF+C T DCG  ++ CNG G A PATL + ++  +G  D   Y VSLVDGFN+PM+V P  G G C    C AD+   CP  LQV+     G V+ACKS C AF   + CC    + P+TC    +S+ FK  CP   +YA+D  S    CS      + FC
Sbjct:   78 RTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDF--YDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKG--SDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.536e-31
Identity = 65/170 (38.24%), Postives = 94/170 (55.29%), Query Frame = -1
Query:  256 RTGCTYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RT CT   GKF+C T DC   ++ CNG G   PA+L + ++   +  +  Y VSLVDG+N+P++V    G G C    CRA++ A CP  LQV+       V+ACKS C AF   + CC   +++ +TC A+ +S  FK  CP   +YA+D  +    CS   +  + FC
Sbjct:   76 RTRCTTNSGKFTCETADCSTGQVACNGNGAIPPASLVEINIA-ANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKG--SDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of CF837178 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.237e-30
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = -1
Query:  256 RTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHDCSSPRELKVIFC 762
            RTGCT+ A GK SC TGDCG +L C  + GA PATLA+++     +D   Y VSLVDGFN+P+ + P   +  C    C+AD+ A CP  L+V           C S C  F TD+ CCRN Y     C A+++S+ FK+ CP   +YA D  +    C+S  +  ++FC
Sbjct:   73 RTGCTFDASGKGSCQTGDCGGQLSCT-VSGAVPATLAEYT----QSDQDYYDVSLVDGFNIPLAINPTNAQ--CTAPACKADINAVCPSELKVDG--------GCNSACNVFKTDQYCCRNAY--VDNCPATNYSKIFKNQCPQAYSYAKDDTATF-ACASGTDYSIVFC 224          
The following BLAST results are available for this feature:
BLAST of CF837178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
OLP1_SOLLC4.314e-8380.00Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.230e-3746.47Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP_PRUAV2.835e-3444.44Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLPH_ORYSJ8.250e-3442.35Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
PR5_ARATH1.077e-3345.29Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TP1B_MALDO2.654e-3242.44Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TP1A_MALDO2.654e-3242.44Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP1_PRUPE2.654e-3243.60Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA6.536e-3138.24Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
PRR3_JUNAS4.237e-3041.18Pathogenesis-related protein OS=Juniperus ashei PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04D18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF837178 ID=CF837178; Name=CF837178; organism=Citrus sinensis; type=EST; length=762bp
TTTTTTTTTACCACACATCAAACTCATTACATTCCCATTCCAAATTGAAT
TGGAACTTACAAAACACACCACAACGTACAGACTGATGACACCCAACATG
ACACAAGCTCACATTGATCATTTTTAATTTCTCTTTTTAGTTACGAGATT
AATTAAAAAGCAAGATACTGCTAATTGACGAAAACAAACACAACAATCCT
AAGCACTGTGAAGCTTGATGCTCCAGCTTATTATTATTCTCATGCTTCTC
TAGTGACAGAAAATAACTTTTAGCTCACGTGGCGAGGAGCAGTCATGCAT
GAGCGAAGGGCTGTCATGGGCATAAGTCATCGTGGCTGGACAAGCGTGCT
TGAAGAACTCCGAAAAGCTCGAAGCCCGGCATGTCTGCGGACTGTTGTAA
TGGTTCCTACAACACAGCTCGTCCGTACCAAACGCCTCACACCCACTCTT
ACATGCCACCACGCGGCCGTGACCCGGCGGTGACCTCACCTGCAGGTTCT
GAGGACACGTGGCTAGCAGGTCAGCGCGACAACCCACTACCGGACAGACG
CCCTTGCCCTCGTGCGGGGTGACAGTCATGGGGACGTTGAAGCCGTCGAC
TAGAGAGACGCCGTAGGAGGAGAGGTCGTTGTGGCCGTGGTGGAGGCTGA
ACTGGGCCAGGGTGGCTGGAGTCGCCCCGCCGAGTCCGTTGCATTCCAAG
CGGTGGCCGCAGTCGCCCGTGACGCAGGAGAATTTGCCGTGGGCGTAGGT
GCAGCCGGTTCT
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