CF837235

Overview
NameCF837235
Unique NameCF837235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.205e-85
Identity = 163/218 (74.77%), Postives = 179/218 (82.11%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ-SXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLK+ S                  +AKAMGHHVTVISSSDKK+ EA++HLGAD YLVSSDAT+MQEAADSLDYIIDTVP  HPLEPY           L GVINTP+QF++PMVMLGRKAITGSFIGSMKET+EML+FC EKG+TS IEV+KMDY+N AFERLEKNDVRYRFVVDVAGSKLD
Sbjct:  140 VVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKLD 357          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.670e-84
Identity = 160/216 (74.07%), Postives = 175/216 (81.02%), Query Frame = -2
Query:  210 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKL 857
            VVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLKQS                  IAKAMGHHVTVISSSDKKR EA++HLGAD YLVSSDA RMQEAADSLDYIIDTVP  HPLEPY           L GV+NTP+QF++PMVMLGRK+ITGSFIGSMKE  EMLEFC+EK ++S IE++KMDY+N AFERLEKNDVRYRFVVDVAGSKL
Sbjct:  140 VVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRAEALDHLGADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVSPMVMLGRKSITGSFIGSMKELAEMLEFCKEKDLSSTIEIVKMDYINTAFERLEKNDVRYRFVVDVAGSKL 355          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.359e-83
Identity = 157/217 (72.35%), Postives = 175/217 (80.65%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VVDQKFVVKIP+GMA EQAAPLLCAG+TV+SPL+HFG KQS                  IAKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEA+DSLDYIIDTVP  HPLEPY           L GVINTP+QF++PMVMLGRK+ITGSFIGSMKET+EML+FC+EKGVTS IE++KMDY+N A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  140 VVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEASDSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDVIGSKLD 356          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.775e-83
Identity = 161/216 (74.54%), Postives = 173/216 (80.09%), Query Frame = -2
Query:  210 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKL 857
            VV QKFVV+IPDGM+ EQAAPLLCAG+TV+SPL HFGLKQS                  IAKAMGHHVTVISSSDKKR EAMEHLGAD+YLVSSD   MQ+AAD LDYIIDTVP  HPLEPY           L GVIN P+QF+TPMVMLGRK+ITGSFIGSMKET+EMLEFC+EKGV SMIEVIKMDY+N AFERLEKNDVRYRFVVDVAGSKL
Sbjct:  140 VVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKL 355          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.833e-81
Identity = 154/217 (70.97%), Postives = 171/217 (78.80%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VVDQ FVVKIP+GMA EQAAPLLCAG+TV+SP +HFG  QS                  IAKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEAADSLDYIIDTVP  HPLE Y           L GVINTP+QF++PMVMLGRK+ITGSFIGSMKET+EML+FC+EKGVTS IE++KMDY+N A ERLEKNDV YRFVVDVAGSKLD
Sbjct:  140 VVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEAADSLDYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVSYRFVVDVAGSKLD 356          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.091e-80
Identity = 154/217 (70.97%), Postives = 169/217 (77.88%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  140 VVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGSKLD 356          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.091e-80
Identity = 154/217 (70.97%), Postives = 169/217 (77.88%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDV GSKLD
Sbjct:  140 VVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGSKLD 356          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.190e-79
Identity = 151/217 (69.59%), Postives = 171/217 (78.80%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VV+QKFVVKIP+G+A EQ APLLCAGVTV+SPLSHFGLK                    +AKA+GHHVTVISSSDKK+ EA+E LGAD YLVSSD   MQEAADSLDYIIDTVP  HPLEPY           L GVINTP+QF+TPMVMLGRK+ITGSF+GS+KET+EMLEF +EKG+TSMIE++ MDY+NKAFERLEKNDVRYRFVVDV GSK +
Sbjct:  141 VVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFE 357          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.716e-79
Identity = 150/217 (69.12%), Postives = 170/217 (78.34%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VV QKFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGLKQ                   IAKAMGHHVTVISSS+KKR EA++ LGAD Y++ SD  +M E ADSLDY+IDTVP +H LEPY           L GVIN P+QFLTP++MLGRK ITGSFIGSMKET+EMLEFC+EKG++S+IEV+KMDYVN AFERLEKNDVRYRFVVDV GS LD
Sbjct:  140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNLD 356          
BLAST of CF837235 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.114e-77
Identity = 153/217 (70.51%), Postives = 168/217 (77.42%), Query Frame = -2
Query:  207 VVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 857
            VV Q+FVVKIPDG+  EQ A ++CAGVTV+SPL  FGLKQS                  IAKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY           LTGVIN P+QF++PMVMLGRK+ITGSFIGSMKET+EMLEFC+EKG+TS IEVIKMDYVN A ERLEKNDVRYRFVVDVAGSKLD
Sbjct:  140 VVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGSKLD 355          
The following BLAST results are available for this feature:
BLAST of CF837235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CADH1_ARACO7.205e-8574.77Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH1_OCIBA4.670e-8474.07Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_TOBAC1.359e-8372.35Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH_POPDE1.775e-8374.54Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH2_TOBAC4.833e-8170.97Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_EUCGL4.091e-8070.97Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU4.091e-8070.97Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_MEDSA1.190e-7969.59Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH5_ARATH7.716e-7969.12Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH_EUCBO1.114e-7770.51Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_04F05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF837235 ID=CF837235; Name=CF837235; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTTTTTTTTTAAATTTCAAAAATACTGATTAAATTAACACCCTGTC
AGTAAACACCTCAGCTTGTTTTTTTTTTTTAACTTCCTAGGAGAAATTGT
AAACACGGAAGCCACATATGGTTAGGCCAACGACGAAAGCATAAAAACCA
AACAAGGCACTCAAAAAACAAAACGAGCATCATGCCAAAATTGAATTTCT
CTACGGATCGAGTTTGCTTCCGGCAACGTCCACGACGAATCTGTACCTAA
CGTCGTTCTTTTCGAGTCTCTCGAATGCTTTGTTAACGTAATCCATCTTG
ATCACTTCAATCATGGAGGTGACTCCCTTCTCTCGGCAGAATTCAAGCAT
TTCCTTTGTCTCCTTCATGCTCCCAATGAAGCTCCCCGTGATTGCCTTTC
TCCCAAGCATAACCATAGGGGTAAGAAACTGCATGGGAGTGTTAATGACA
CCCGTCAAGATCAACTTTCCATCAAGCTTCAACAGCGAAAGGTAAGGCTC
CAGAGGGTGATTTGCGGGCACGGTATCAATGATATAATCAAGTGAGTCAG
CGGCTTCTTGCATACGAGTTGCGTCGGAGCTGACAAGGTACTGATCGGCA
CCAAGATGCTCCATAGCTTCCACTCTTTTCTTATCAGAAGAGCTAATCAC
AGTAACATGGTGTCCCATCGCCTTAGCTATCAAAACCCCCATGTGACCTA
CTCCTCCGAGCCCCAAGATTCCTCCTCTCAGCCCGCTCTGCTTCAATCCA
AAGTGGCTCAGGGGACTGAACACTGTCACACCAGCACACAATAGCGGTGC
CGCCTGCTCCAGTGCCATCCCATCTGGTATTTTCACCACAAACTTTTGAT
CAACGACC
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