CF838096

Overview
NameCF838096
Unique NameCF838096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.286e-30
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  260 TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 484
            T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   30 TSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.072e-28
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = -2
Query:  260 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 478
            NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = -2
Query:  260 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 478
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.336e-23
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  260 HTINSSK-GTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 487
            H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = -2
Query:  260 SKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 472
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = -2
Query:  260 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 439
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CF838096 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = -2
Query:  260 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 436
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of CF838096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.286e-3072.00Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH3.072e-2873.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH7.830e-2465.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.336e-2362.34Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GAST1_SOLLC2.612e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC4.456e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
SNAK1_SOLTU5.820e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_05L21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838096 ID=CF838096; Name=CF838096; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTGAAATTTAAAAGGAGAAGAAGCCTCTTACTATT
ATTCTCTGGAAACTTATGTATCCACAATAAGTAACATGAAATGGATTTAT
TTATTTATTCATGGGAATATGGATCAACTCTGTTTTTCTGGCCACAGGCA
ACACACGCACACGCACACGCACATATTTATACATAGAGAGAGAGAGAATA
GAAGCTCCAAAAAAATTAATTAAGAAGTAGACGACGTCGTTTCAACTTAA
AATATTTCAAGGGCACTTGCGTCTGCCGTGGTGGGTGGTCATATTGGCGT
AGCAAGGGCAGACCTCAGTGTTGCCTGCAGTGCCTGGAGGAACACAATTG
CAGCGGGCGCAGCAGGTACCACATGCCCTGTGGCACAGGTTTGGCCTCGA
CGATAATCGGCACCTGGCCTGGCATGCACCTCCACAGTCAATTGATGGTT
TTGGATAACCAGTTCCTTTGCTTGAGTTAATCGTATGCTCAGCTTCAACG
AGATGAAAAACAACAAGTGAGAGGAGGACTGAAGCAATAAGAGCTTTGGA
GATGGCCATGGCTTACAATTAGTTATGCTTA
back to top