CF838098

Overview
NameCF838098
Unique NameCF838098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.098e-76
Identity = 145/163 (88.96%), Postives = 155/163 (95.09%), Query Frame = -1
Query:  309 KKDIDXIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 797
            K DI   +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE
Sbjct:  160 KNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.434e-76
Identity = 145/164 (88.41%), Postives = 158/164 (96.34%), Query Frame = -1
Query:  306 KKDIDXIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 797
            KKDI+ IITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDSYEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Sbjct:  163 KKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 326          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.480e-28
Identity = 75/151 (49.67%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  312 PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 755
            P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  148 PVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.526e-28
Identity = 74/151 (49.01%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  312 PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 755
            P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  148 PVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = -1
Query:  312 PLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 755
            P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G  G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  148 PVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKGA-GSDAAMEFEPSEET--ILETLLPKNLTVQVFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 295          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.778e-26
Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = -1
Query:  312 LNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 752
            + Y     +AD+IL    N EFD   + Y++F SV+S +PT   V+ P ++E      G+ G    Y+ E  E    IL +L     +  +F A+LENA SEQGARM+AMD+++RNAG+M+DRLT  YNR+RQA+IT ELIEIISGA AL
Sbjct:  149 IGYDNARAIADEILDRFDNGEFDVATLFYNRFESVISQVPTARQVI-PAVIEE-----GEAGASSLYDYEPDENA--ILNDLLPRSVATQVFAALLENAASEQGARMTAMDNATRNAGDMIDRLTTVYNRSRQAAITKELIEIISGAEAL 290          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26
Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = -1
Query:  312 LNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 752
            +NY     +   I++N E   FD   I Y+KF +V++ +P    ++  +  E E  S       D+YE E  E   EIL NL     S  +F A+LEN+ SEQG+RMSAMD+++RNAGEM+D+LT+ YNR+RQA+IT ELIEIISGA +L
Sbjct:  149 INYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQIPQEQQIIPLKTSEAEENSSE-----DNYEFEPDED--EILSNLLPKNISTQIFKAMLENSASEQGSRMSAMDNATRNAGEMVDKLTIEYNRSRQAAITKELIEIISGAESL 291          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25
Identity = 68/152 (44.74%), Postives = 96/152 (63.16%), Query Frame = -1
Query:  312 LNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSP--ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 752
            L Y   + +A D+L   E   FD   I +++F SV+S +PT   ++    E VE   ++    G L  YE     ++  +L++L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M+DRLT+ YNR+RQA IT+ELIEIISGA AL
Sbjct:  149 LGYADAASIATDVLNRFEEDEFDVATIFFNRFESVISQIPTATQIIPAVFEDVEEADDTSKDSGTLYEYE----PSEEAVLEDLLPRGIATQIFTALLENGASEQGARMSAMDNATRNAGDMIDRLTIEYNRSRQAVITSELIEIISGAEAL 296          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_MESSB (ATP synthase gamma chain OS=Mesorhizobium sp. (strain BNC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  312 ADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 725
            AD I K V       EFD   +IYS+F SV+S +PT   ++   + + E ES G + E   YE + G     IL +L     +  +F A+LENA  E GA+M+AMD+++RNAGEM+++LT+TYNR RQA IT ELIEIISGA AL
Sbjct:  153 ADAIAKKVIGLFEAGEFDVCTLIYSRFKSVISQIPTEQQIIPAAVPQAEGESTGAIYE---YEPDAGA----ILADLIPRNIAVQIFRALLENAAGEMGAKMTAMDNATRNAGEMINKLTITYNRQRQAQITKELIEIISGAEAL 290          
BLAST of CF838098 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.718e-25
Identity = 65/162 (40.12%), Postives = 104/162 (64.20%), Query Frame = -1
Query:  312 KDIDXIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 794
            K+I  +  E+ + P  +   S +A+++L+   ++   +I+Y++F SVVS+  +   + S   VE+      KL   DS +        +++++  EF  + ++F  + E ACSEQ +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct:  146 KNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSE----KLAVYDSLD-------SDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 296          
The following BLAST results are available for this feature:
BLAST of CF838098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG3_ARATH1.098e-7688.96ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG3_IPOBA1.434e-7688.41ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG_METC42.480e-2849.67ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METEP5.526e-2849.01ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METPB9.426e-2849.01ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_PARDP1.778e-2647.33ATP synthase gamma chain OS=Paracoccus denitrifica... [more]
ATPG_PELUB3.960e-2646.00ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_JANSC1.152e-2544.74ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_MESSB2.567e-2547.59ATP synthase gamma chain OS=Mesorhizobium sp. (str... [more]
ATPG_DROME5.718e-2540.12ATP synthase subunit gamma, mitochondrial OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05L22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838098 ID=CF838098; Name=CF838098; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAAGTAAAACAGGGTCATAAAATCATTAACTTCCTC
GGGCTGTGAAGTCCCAAACACCAAGCCATTTATGTTCACTTGCAAGGCAC
AATAATTGAGAATCAAAAACTATATTGAAAATATCGCAAGTATAATTGTT
AATTCCCCAAAAAGAAGTTTTGACACTGGAGAGATTATTGGAGTAGCTCA
ACAAAAACTCTTATGAAAGTACCACATTGAAGTTTGAACAAAGCCTCCAC
CAAGGATTTATTTCGTCACTGTCAAGAAAAGTGAGCACTGTCGCTTTTGT
AATCAGCCTTCCAGTGCTGATGCTCCAGATATAATCTCAATCAACTCGGT
GGTGATAGATGCTTGACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAA
GCATTTCTCCCGCATTTCTGCTTGAGCTATCCATGGCAGACATCCTTGCC
CCTTGCTCACTGCAAGCATTCTCCAACACCGCATTGAACATGACACAAGA
GAATTGGAACTCAGCCAGATTTTGAAGTATTTCACCCTTTGTTTCACCGC
CTTCAATTTCATAGGAGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCT
TCTCTCTCCACAAGCTCAGGCGATAATACAGTTGCCATTGTCGGCAGAAA
GGAGACCACAGAATGGAACTTGCTATAGATAATCCTCAAAGCATCAAATT
CTACATTCTTTAAGATATCATCTGCAAGAACGGAAACCTGGGTATAATTT
AGAGGATTTTTCTGTAACTCAGTTATGATGANGTCAATATCTTTCTT
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