CF838099

Overview
NameCF838099
Unique NameCF838099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.422e-103
Identity = 196/237 (82.70%), Postives = 217/237 (91.56%), Query Frame = 1
Query:  109 MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGE 810
            MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+
Sbjct:    1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGD 237          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.431e-97
Identity = 180/235 (76.60%), Postives = 211/235 (89.79%), Query Frame = 1
Query:  109 MAMAALRREGRRFATPLISPRPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGE 810
            MAMA  RREGRR   P I+ RPIAAIRSP  S+ E+  LGVRSISTQ+VRNRMKSVKNIQKITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGE
Sbjct:    1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGE 234          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.967e-20
Identity = 66/209 (31.58%), Postives = 114/209 (54.55%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL 804
            S + ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L
Sbjct:    3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTL 209          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 7.475e-20
Identity = 69/194 (35.57%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  226 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAES 792
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAES 214          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.845e-19
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  226 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 735
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISY 196          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.328e-19
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  226 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 735
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISY 196          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.328e-19
Identity = 64/179 (35.75%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  226 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 735
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++       +    D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAPE----DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISY 196          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.328e-19
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 807
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  EL   E  +    G
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAG 210          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.264e-19
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 807
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  EL   E  S    G
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAG 210          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.264e-19
Identity = 61/179 (34.08%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  226 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 735
            VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  ++    S  L++     + +    D KK++++ +SSD+GLCG I+S+  K  KS     +   KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   +I+++F SV+S+
Sbjct:   22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSVIFNRFRSVISY 196          
The following BLAST results are available for this feature:
BLAST of CF838099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
ATPG3_IPOBA1.422e-10382.70ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH4.431e-9776.60ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO1.967e-2031.58ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN7.475e-2035.57ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_HUMAN4.845e-1936.00ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_PONAB6.328e-1936.00ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]
ATPG_MOUSE6.328e-1935.75ATP synthase subunit gamma, mitochondrial OS=Mus m... [more]
ATPG_METEP6.328e-1931.73ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METC48.264e-1931.73ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_MACFA8.264e-1934.08ATP synthase subunit gamma, mitochondrial OS=Macac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05L22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838099 ID=CF838099; Name=CF838099; organism=Citrus sinensis; type=EST; length=811bp
GTTCGACACCTGAGCTCGCACGACCCAAACAGAACATAAAGCTTTGGATC
TGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGACGACGGTTCA
TCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGGCGATTCGCC
ACCCCTCTCATCTCCCCACGTCCAATCGCCGCAATCAGATCCCCTTTCCT
TTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAACTCAAATTG
TTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATTACAAAGGCT
ATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTGA
AAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACTC
CCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGACAAA
GGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTTT
GCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTGG
GAGAGAAGGCAAAGGCAATATTAGTACGTGACTCGAAGAAAGATATTGAA
CTCATCATAACTGAGTTACAGAAAAATCCTCTAAATTATACCCAGGTTTC
CGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTGAGGA
TTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAATGGCA
ACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGGGAAA
GCTTGGTGAGC
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