CF838102

Overview
NameCF838102
Unique NameCF838102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838102 vs. ExPASy Swiss-Prot
Match: RU1C_DICDI (U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum GN=snrpC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   58 EYYCDYCDTYLTHDSPSVIKQHNAGYKHEADVRSYYHQFEEQQTQSLIDHRIKEH 222
            +YYCDYCD YLTHDSPSV K H  G +H+  V+ +Y QFE + TQSLI+ R+KE+
Sbjct:    3 KYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEY 57          
BLAST of CF838102 vs. ExPASy Swiss-Prot
Match: RU1C_XENLA (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrp1c PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   58 EYYCDYCDTYLTHDSPSVIKQHNAGYKHEADVRSYYHQFEEQQTQSLIDHRIKEHLGQTAAFQ 246
            ++YCDYCDTYLTHDSPSV K H +G KH+ +V+ YY ++ E+Q QSLID         TAAFQ
Sbjct:    3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQ 58          
BLAST of CF838102 vs. ExPASy Swiss-Prot
Match: RU1C_MOUSE (U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   58 EYYCDYCDTYLTHDSPSVIKQHNAGYKHEADVRSYYHQFEEQQTQSLIDHRIKEHLGQTAAFQ 246
            ++YCDYCDTYLTHDSPSV K H +G KH+ +V+ YY ++ E+Q QSLID         TAAFQ
Sbjct:    3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQ 58          
BLAST of CF838102 vs. ExPASy Swiss-Prot
Match: RU1C_HUMAN (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   58 EYYCDYCDTYLTHDSPSVIKQHNAGYKHEADVRSYYHQFEEQQTQSLIDHRIKEHLGQTAAFQ 246
            ++YCDYCDTYLTHDSPSV K H +G KH+ +V+ YY ++ E+Q QSLID         TAAFQ
Sbjct:    3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQ 58          
BLAST of CF838102 vs. ExPASy Swiss-Prot
Match: RU1C_BOVIN (U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   64 YCDYCDTYLTHDSPSVIKQHNAGYKHEADVRSYYHQFEEQQTQSLIDHRIKEHLGQTAAFQ 246
            YCDYCDTYLTHDSPSV K H +G KH+ +V+ YY ++ E+Q QSLID         TAAFQ
Sbjct:    5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQ 58          
The following BLAST results are available for this feature:
BLAST of CF838102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RU1C_DICDI5.898e-1460.00U1 small nuclear ribonucleoprotein C OS=Dictyostel... [more]
RU1C_XENLA1.314e-1357.14U1 small nuclear ribonucleoprotein C OS=Xenopus la... [more]
RU1C_MOUSE1.314e-1357.14U1 small nuclear ribonucleoprotein C OS=Mus muscul... [more]
RU1C_HUMAN1.314e-1357.14U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
RU1C_BOVIN3.823e-1359.02U1 small nuclear ribonucleoprotein C OS=Bos taurus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05L24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838102 ID=CF838102; Name=CF838102; organism=Citrus sinensis; type=EST; length=592bp
GTGTGCGGGCTTTTTATCTGTTTTCAACGTAAATCAATCAACAGAAAGCA
ATGCCTCGAGTACTACTGTGATTATTGTGACACCTATTTGACGCACGATT
CTCCATCTGTTATAAAACAGCACAATGCAGGCTACAAGCACGAGGCAGAT
GTAAGAAGCTACTATCATCAATTTGAGGAACAACAAACCCAAAGTTTAAT
TGATCATAGAATCAAGGAACATCTTGGCCAAACTGCAGCTTTCCAACACG
CTGGTGCCGCATACAATCAGCATCTTTTGGCTCAGAGGCCCCGCCTTCCG
GCTCTTCCGACACCTGTTATGCCAATGACTGGAAGTGCTCCATTAATCCC
AGGGATGAGGCCTCCTGTTCTTCCAAGACCAAGCCCGAGTCCTCCAGGGT
ATGTGTCTGCTCCAAGCATGCCACCAATGATGGCACCTCCTGGTGCTCCT
TCTGCACCTGGTCAATTAAATGGTTATCCAAGACCTCCTGCTGAAATGAA
CCCAACAGCAGTTTCTGGTAGTGCGGCGCCACCTGCTTCATCCAATGGAG
CCCCTAGTATGGCTACACCTCAAACCTACCAAGCCAATCCAA
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