CF838113

Overview
NameCF838113
Unique NameCF838113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_ARATH (Mitochondrial import inner membrane translocase subunit Tim10 OS=Arabidopsis thaliana GN=TIM10 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.143e-35
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 3
Query:  570 MAANNPTGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM 821
            MA+  P GV KEQAF MA+TEMEYRVELFN+LAQTCFNKCVDKRYKE+ELNMGENSCIDRCVSKYWQVN M+GQLLSA G+PP+
Sbjct:    1 MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSA-GKPPV 83          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_SCHPO (Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharomyces pombe GN=tim10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  606 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 812
            Q   MAE E+E   ++FNRL  TC  KC+  +Y E++L  GE+ CIDRCVSKY++ N  + Q +   G+
Sbjct:   16 QNIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHMQKRGQ 84          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_YARLI (Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica GN=TIM10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 3
Query:  570 MAANNPTGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG 806
            +   NP G    Q    AE E++   ++FNRL ++C  KC+   Y   +LN  E  C+DRCV+KY+ VN+ +G++   G
Sbjct:    6 LGGQNPNGPSNPQKLLAAEAELDMVTDMFNRLVESCHEKCIKADYSSGDLNANEGLCLDRCVAKYFDVNTKVGEVSMRG 84          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_EMENI (Mitochondrial import inner membrane translocase subunit tim10 OS=Emericella nidulans GN=tim10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  594 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 791
            +  EQ    AETE+E   ++FNRL+++C  KC+   Y+E +LN GE+ C+DRCV K+++VN  + +
Sbjct:   11 MSSEQKIAAAETEVEMITDMFNRLSESCSKKCIPNDYREGDLNKGESVCLDRCVGKFFEVNIKVSE 76          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_YEAST (Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae GN=MRS11 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  594 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 812
            +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+KY++ N  +G+ +   G+
Sbjct:   13 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 85          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_ASPFU (Mitochondrial import inner membrane translocase subunit tim10 OS=Aspergillus fumigatus GN=tim10 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  585 PTGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 791
            P  +   +    AETE+E   ++FNRL ++C  KC+   Y+E +LN GE+ C+DRCVSK+++VN  + +
Sbjct:    8 PPKMSSAEKIAAAETEVEMVSDMFNRLTESCQKKCIPNDYREGDLNKGESVCLDRCVSKFFEVNIKVSE 76          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_ASHGO (Mitochondrial import inner membrane translocase subunit TIM10 OS=Ashbya gossypii GN=TIM10 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  594 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 812
            +  +Q    AE E++   ++FN+L   C  KC+D  Y E +LN  E++C+DRCV+KY++ N  +G+ +   G+
Sbjct:   10 LSSQQKIAAAEAELDLVTDMFNKLVSNCHRKCIDMNYNEGDLNKNESNCLDRCVAKYFETNVKVGENMQQLGQ 82          
BLAST of CF838113 vs. ExPASy Swiss-Prot
Match: TIM10_DROME (Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster GN=Tim10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 3
Query:  570 MAANNPTGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 803
            MA    +  D+ +   M E E+E   +L+NR+   C  KC+  RY ESEL  GE  CIDRCV+KY  ++  IG+ L+A
Sbjct:    1 MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKYLDIHEKIGKKLTA 78          
The following BLAST results are available for this feature:
BLAST of CF838113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TIM10_ARATH5.143e-3583.33Mitochondrial import inner membrane translocase su... [more]
TIM10_SCHPO3.587e-1244.93Mitochondrial import inner membrane translocase su... [more]
TIM10_YARLI6.118e-1236.71Mitochondrial import inner membrane translocase su... [more]
TIM10_EMENI7.990e-1242.42Mitochondrial import inner membrane translocase su... [more]
TIM10_YEAST1.044e-1136.99Mitochondrial import inner membrane translocase su... [more]
TIM10_ASPFU3.036e-1140.58Mitochondrial import inner membrane translocase su... [more]
TIM10_ASHGO3.036e-1135.62Mitochondrial import inner membrane translocase su... [more]
TIM10_DROME5.179e-1142.31Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838113 ID=CF838113; Name=CF838113; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTTTTCTAAAAATTGAAATTATATTTCCCAGGCAATGCATTCAT
TAACCAATTATCTTATATATATGGTAGAATCCCTTGCATATTGCAAGTAA
TTAGAACAAAAAGTACTGTACATGAAGAACAATAATTTAATACACTTTAA
TCAGCTTCAGACCCTTTTGATTCCTCCACCGCAACTGAATTAACAACAGG
GTCCTCCTCAATTTCGTTTTCAGTCTTGTCTTCCGCTATCACTAAAGGAG
GTGAAGGTCCACCCATACCTTCTGATGTATTTTCAAGCGCGACCGCACCA
TCAACAACATCCATTGGTTCGAAGGCTTTGGCTTCAGGTTCTTTTGACTC
AATTTGCGATACTGAGCTGCCTACTGGTTCTTTATCAGAACACTCATTCT
TTTCTTCTTCAGCTGCCAAGAAGGATGCAGGTCCATCCGCCTCTTCTGGA
ACAGGTACGGACACGACCCCACCACCCTCAACAGCTGTTTGGCTGCTAAC
TTCTGCATCAGGCCCCTTTGTACGAACCTAATTGACGGTGTCCCACTAGT
TAATTTCTCAAAAGTTGTAATGGCTGCCAATAATCCAACGGGTGTTGATA
AAGAACAGGCATTCGGTATGGCAGAAACAGAAATGGAGTACAGGGTAGAA
TTGTTTAACAGGCTCGCCCAGACATGTTTTAATAAGTGTGTTGACAAAAG
GTACAAAGAATCCGAGCTAAATATGGGTGAAAATAGTTGCATTGATCGTT
GTGTTTCAAAGTATTGGCAGGTTAATAGCATGATTGGCCAGCTGCTCAGT
GCCGGTGGTCGGCCTCCCATGTAAAATTTAGGGATTCTCCAGTTTGAAC
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