CF838120

Overview
NameCF838120
Unique NameCF838120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838120 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  468 SAWKPKFDVXXXXXXXXXXXA-GSDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK-AKV 749
            + WKPKF V           A GSDG++GFQKKVFDLLYK+ADIPFL  +K KI D+IEK EKQPNLTIGILV+VV V +++ F++IFGGKK AKV
Sbjct:  408 TTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGGKKPAKV 503          
BLAST of CF838120 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.337e-25
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = -3
Query:  468 SAWKPKFDVXXXXXXXXXXXAG-SDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKV 749
            S WKPKFDV           AG +DGL  +QKKVFDLLYKVADI FL AYK KI+++IEK E QPNLTIG+L+S+V V +++ FK+IFGG KAKV
Sbjct:  401 STWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKV 495          
BLAST of CF838120 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  477 SAWKPKFDVXXXXXXXXXXXAG-------SDGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKK 749
            + WKPKF++           A        S+G+AG QKK FDLLYK+ADI FL   K KII++IEKGEKQPNLTIGI+VSVV V +++ F++IFGGKK
Sbjct:  407 TTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGGKK 504          
BLAST of CF838120 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  474 SAWKPKFDVXXXXXXXXXXXAGS-DGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 749
            + WKPKFDV           AGS DGL  +QK VFDLL KVAD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V  ++  K+IFGGKKA
Sbjct:  399 TTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKA 491          
BLAST of CF838120 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  474 DGLAGFQKKVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 680
            DGL G QK VFD+LYK+AD+PFL  +K+K++++IEK E QPN+TIG++VS++ VI ++L K++FGGKKA
Sbjct:  426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGGKKA 494          
The following BLAST results are available for this feature:
BLAST of CF838120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CALX_SOYBN1.049e-2563.54Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX2_ARATH2.337e-2562.11Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_PEA1.086e-2255.10Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX1_ARATH7.037e-2258.06Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_HELTU6.586e-2059.42Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05M10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838120 ID=CF838120; Name=CF838120; organism=Citrus sinensis; type=EST; length=754bp
TTTTTTTTTTTTTTTTTCCCTGAACTATAAAATATAATAATTGAAACCCA
AGGCTAAGTTGTTATATCCTTACTTTCTGCAATAGAGAATAAAACTCTCC
ACAATTAGCCATAACAATTTTTTCTTCAATGCAGAAAACGAATCATCTCA
GCATTAGACTGTCTCAAATTATACACTCTTTCATACATTTTAGTGTTTCA
AAACAAAGCTCAAAAAGAACGAAAAAGAAGAAAAAAGAAAAGGCAAAAGC
CAAGAATCCAGCTAGGGAAAACAACTAAAGCTGATAATCTACCAAAAGTG
CAGCTAATAGCCACAGGCATCCTGCTTCCATTTGTTTAATTATCGCGTCT
CCTCCGACGAGCAGGAGCAGCAGCAGTTTCTTCCTTCTCGGTCTCTTCTT
CCTTTTCACCACTGTCCTCTTGTTTGCTCGAGGAACTCTCTGCAGCTTCT
GTTTCTTTTGGGGGCTCTACTTTAGCCTTCTTTCCACCAAAAATGATCTT
GAACAGAACTGTGATGATCACCGCCACAACAGAGACAAGGATACCAATTG
TAAGGTTTGGTTGTTTCTCTCCCTTCTCAATCACATCAATGATCTTAAGT
TTGTATGCATCCAAGAAAGGAATGTCTGCAACCTTGTACAAGAGATCAAA
TACCTTCTTCTGGAAGCCTGCAAGGCCATCTGAACCAGCAGCTGCTTCCT
CAGCCTTCAGTTTCTCTTTCTCAACATCAAACTTAGGCTTCCATGCAGAA
GCCC
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