CF838124

Overview
NameCF838124
Unique NameCF838124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.996e-41
Identity = 79/94 (84.04%), Postives = 88/94 (93.62%), Query Frame = -3
Query:  320 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHEDKSE 601
            TG VSDLKVSGLFFAIGHEPATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGS + KS+
Sbjct:  240 TGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQQGKSD 333          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.219e-41
Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = -3
Query:  320 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHEDKSE 601
            TG VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGS E KS+
Sbjct:  290 TGDVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 383          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_NEUCR (Thioredoxin reductase OS=Neurospora crassa GN=cys-9 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = -3
Query:  329 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHED 601
            TG+   L+ +GLF+AIGH+PAT  V GQL+  +DGY++TKPGTT TSV GVFAAGDVQDK+YRQA+T+AGTGCMAAL+AE +L E   HE+
Sbjct:  232 TGKEETLEANGLFYAIGHDPATALVKGQLETDADGYVVTKPGTTLTSVEGVFAAGDVQDKRYRQAITSAGTGCMAALDAEKFLSE---HEE 319          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = -3
Query:  344 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 601
            TG+ SDL V+GLF+AIGH PAT+ V GQ+DL   GY+ T PG+T T+VPG+FAAGDVQD +YRQAVT+AG+GCMAAL+AE +L E+
Sbjct:  233 TGEESDLPVNGLFYAIGHTPATQLVAGQVDLDESGYVKTVPGSTLTNVPGLFAAGDVQDSRYRQAVTSAGSGCMAALDAEKFLSEL 318          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_YARLI (Thioredoxin reductase OS=Yarrowia lipolytica GN=TRR1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.630e-26
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = -3
Query:  347 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 601
            TG+  DL+V+GLF+AIGH PAT  V GQ++   +GY++T PGT +TSV GVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E  L E
Sbjct:  233 TGEKRDLEVNGLFYAIGHIPATSIVKGQVETDEEGYVVTVPGTANTSVKGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKLLAE 317          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_CANGA (Thioredoxin reductase OS=Candida glabrata GN=TRR1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.630e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = -3
Query:  344 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 601
            T + +DL V+GLF+AIGH PATK V+GQ++    GYI T PG++ TSVPGVFAAGDVQD KYRQA+T+AG+GCMA L+AE YL E+
Sbjct:  233 TNEETDLPVNGLFYAIGHTPATKIVEGQVETDETGYIKTIPGSSLTSVPGVFAAGDVQDSKYRQAITSAGSGCMAGLDAEKYLTEL 318          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = -3
Query:  344 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 601
            T +  DL V+GLF+AIGH PAT  V GQ+DL   GY+ T PG+T T+VPGVFAAGDVQD +YRQA+T+AG+GCMAAL+AE Y+ E+
Sbjct:  263 TNEEYDLPVNGLFYAIGHTPATNIVAGQVDLDEAGYVKTVPGSTLTNVPGVFAAGDVQDARYRQAITSAGSGCMAALDAEKYITEL 348          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_DEBHA (Thioredoxin reductase OS=Debaryomyces hansenii GN=TRR1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = -3
Query:  347 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 601
            T +  DL V+GLF+AIGH PAT+    QL+     YI+TKPGT  TS+PGVFAAGDVQDK+YRQA+T+AGTGCMAAL+ E +L E
Sbjct:  233 TKETKDLPVNGLFYAIGHIPATQIFAKQLETDDQNYILTKPGTAETSIPGVFAAGDVQDKRYRQAITSAGTGCMAALDCEKFLSE 317          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB_PENCH (Thioredoxin reductase OS=Penicillium chrysogenum GN=TRR1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.380e-25
Identity = 50/85 (58.82%), Postives = 72/85 (84.71%), Query Frame = -3
Query:  329 LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHED 583
            ++ +GLF+A+GH+PA+  V GQ++L  +GYIITKPGT+ T+V GVFA GDVQDK+YRQA+T+AG+GC+AALEAE ++ E  +H++
Sbjct:  245 VEANGLFYAVGHDPASGLVKGQVELDDEGYIITKPGTSFTNVEGVFACGDVQDKRYRQAITSAGSGCVAALEAEKFIAETETHQE 329          
BLAST of CF838124 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.380e-25
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  344 SDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 589
            +DL VSGLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG+GCMAAL+AE YL  +
Sbjct:  237 TDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL 318          
The following BLAST results are available for this feature:
BLAST of CF838124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TRXB1_ARATH3.996e-4184.04Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
TRXB2_ARATH5.219e-4185.11Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB_NEUCR1.021e-2865.93Thioredoxin reductase OS=Neurospora crassa GN=cys-... [more]
TRXB_ASHGO1.925e-2766.28Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]
TRXB_YARLI1.630e-2664.71Thioredoxin reductase OS=Yarrowia lipolytica GN=TR... [more]
TRXB_CANGA1.630e-2665.12Thioredoxin reductase OS=Candida glabrata GN=TRR1 ... [more]
TRXB_KLULA6.194e-2663.95Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]
TRXB_DEBHA1.057e-2563.53Thioredoxin reductase OS=Debaryomyces hansenii GN=... [more]
TRXB_PENCH1.380e-2558.82Thioredoxin reductase OS=Penicillium chrysogenum G... [more]
TRXB1_YEAST1.380e-2568.29Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838124 ID=CF838124; Name=CF838124; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTGTTAATATCAATAGATTTATGATGACAATCCTTT
AAAGAATAATATATTCTTAAAAAATTCCAACCAACAACTACATTCTAAAA
TGCAGCACTAATACCAACTTAAAACAAATTCCTTATCCAATTAGTTTTTC
CAACCAACTATTGGAAGCCAATAAATAAGTCACCAAGACAGTACTGATTC
ATCACTTGAATTGGTCGAGAAAAGGCCTTCTTCATTCAGAGGTAGATTTA
GATCAAGTTTGCATGTAGACTATTCTGCTTTCATCATATCCCAGCCCTGC
CATTATCCTACAGTGAAGATTCACTCTTATCCTCGTGAGATCCTATCTCT
TGCAAGTAATGCTCAGCTTCCAAGGCTGCCATGCACCCAGTGCCGGCGGC
GGTAACAGCCTGCCTGTACTTCTTATCCTGAACATCTCCAGCAGCAAAAA
CTCCAGGGACACTAGTGTGTGTAGTCCCAGGTTTGGTAATAATATAACCA
TCAGAATGCAGGTCCAACTGACCATCCACAAACTTAGTAGCAGGCTCGTG
TCCAATGGCAAAGAACAAGCCAGACACCTTCAAATCAGAAACCTGTCCAG
TCACCAAATTCTTCACCTTCAATCCTCCCAGAACCTTCTTATCCCCTTCT
C
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