CF838128

Overview
NameCF838128
Unique NameCF838128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 64/182 (35.16%), Postives = 90/182 (49.45%), Query Frame = -2
Query:  160 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKLI 702
            HINP V+F   L    S  RA +YI+AQC+GGI G      +V   + H ++  G   N+V          G  T  AL  EII +FV ++ +V+ A D ++      V V   +   +G  VF+    T      G G+NPAR +G A++      WD HW+FWAGP I  +A A Y + I
Sbjct:  100 HINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGV----GIVKGIMKHQYNANGGGANMVAS--------GYSTGTALGAEIIGTFVLVY-TVFSATDPKRNARDSHVPVLAPL--PIGFAVFMVHLATIP--ITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYI 264          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 60/178 (33.71%), Postives = 89/178 (50.00%), Query Frame = -2
Query:  172 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALY 702
            HINP V+ A   T   S  ++  YI AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +F  +F +++ + DS++    G V + I     +G L  ++        Y GA +NPAR  GPA++ G   W+ HW++W GP I A +A ALY
Sbjct:   95 HINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSVALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALY 248          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = -2
Query:  187 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 702
            HINP V+ A   T   S  ++  YI AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +F  +F +++ + DS++    G + + I I   +G L  ++        Y GA +NPAR  GPA++ G   W+ HW++W GP I  V
Sbjct:   95 HINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLSAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGISVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAV 242          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = -2
Query:  172 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALY 702
            HINP V+ A   T   S  ++  YI AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +F  +F +++ + DS++    G + + I     +G L  ++        Y GA +NPAR  GPA++ G   W+ HW++W GP I A +A ALY
Sbjct:   98 HINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNV-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALY 251          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 63/183 (34.43%), Postives = 89/183 (48.63%), Query Frame = -2
Query:  160 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRG-GHLWDRHWVFWAGPAIACVAFALYTKLI 702
            HINP V+F   L    S TRA  Y++ QC+G I GA  ++    +K  +  + GG   NVV PG              L  EI+ +F+     V+  F +  AK   R + V I+    +G  VF+    T      G G+NPAR LG A++   GH WD HW+FW GP I     A+Y +++
Sbjct:  114 HINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF--QKGLYETTGGGA--NVVAPG--------YTKGDGLGAEIVGTFIL----VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP--ITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVV 278          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = -2
Query:  187 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 702
            HINP V+ A   T   S  ++  YI AQC+G I GA  L  V    +     +GG  + +V     G +  G G    L +E+I +F  +F +++ + DS++    G + + I     +G L  ++        Y GA +NPAR  GPA++ G   W+ HW++W GP I  V
Sbjct:   95 HINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV-----VGGLGVTMV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAV 242          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = -2
Query:  172 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALY 702
            HINP V+ A   T   S  ++  YI+AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +F  +F +++ + DS++    G + + I     +G L  ++        Y GA +NPAR  GPA++ G   W  HW++W GP + A +A ALY
Sbjct:   95 HINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WANHWIYWVGPIMGAVLAGALY 248          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 55/172 (31.98%), Postives = 84/172 (48.84%), Query Frame = -2
Query:  187 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 702
            HINP V+ A   T   S  ++  YI AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +F  +F +++ + DS++    G + + I     +G L  ++        Y GA +NPAR  GPA++ G   W+ HW++W GP I  V
Sbjct:   95 HINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAV 242          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 63/182 (34.62%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  160 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRG-GHLWDRHWVFWAGPAIACVAFALYTKLI 702
            HINP V+F   L    S TRA  YI+ QC+G I GA  ++           +LGG    V      G    GLG       EII +FV ++ +V+ A D++++     V +   +   +G  VF+    T      G G+NPAR LG A++    H WD HW+FW GP I     ALY +L+
Sbjct:  112 HINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQ---TLGGGANTVAHGYTKGS---GLGA------EIIGTFVLVY-TVFSATDAKRSARDSHVPILAPLP--IGFAVFLVHLATIP--ITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLV 276          
BLAST of CF838128 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 64/184 (34.78%), Postives = 84/184 (45.65%), Query Frame = -2
Query:  160 HINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLG-GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKLI 702
            HINP V+F   L    S TRA  YI+ QC+G I G     A V K       +G G   NVV P        G      L  EI+ +F+     V+  F +  AK   R + V I+    +G  VF+    T      G G+NPAR LG A++    H W  HW+FW GP I     A+Y ++I
Sbjct:  118 HINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICG-----AGVVKGFQQGLYMGNGGGANVVAP--------GYTKGDGLGAEIVGTFIL----VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP--ITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVI 282          
The following BLAST results are available for this feature:
BLAST of CF838128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PIP26_ORYSJ2.472e-1835.16Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
AQP4_RAT1.602e-1733.71Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_BOVIN1.602e-1732.56Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP4_NOTAL2.093e-1733.15Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
PIP12_ORYSJ2.733e-1734.43Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
AQP4_HUMAN4.662e-1731.98Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_MOUSE6.089e-1732.58Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME6.089e-1731.98Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
PIP13_ARATH1.772e-1634.62Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP13_MAIZE2.314e-1634.78Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838128 ID=CF838128; Name=CF838128; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTTTTTTTTTTATAGACATAAAATATATTTTCAATAGATATCTC
TCTTTTTAATTCCTTAAAACATGAAACACCTTCAATTAATCCTAATAAGC
CAATAAGGGTGATTGAAATTCAAGTTACATCACTTGATGGTGTGCAAATT
CTGACTTGGAATGAGCTTAGTGTACAAAGCAAATGCCACGCAAGCGATAG
CCGGCCCGGCCCAAAAAACCCAGTGGCGATCCCAGAGATGGCCTCCTCTA
ACGAGTGCTGGGCCCAAGCATCTTGCCGGGTTGAGCCCAGCTCCAGCATA
GCCCTTTTGAGCAGTAACAGTTGTCGAGACAAAAACCAGAAGACCCAACA
CTGTTCCAATGACAATGCATACGGTAACTCTGCCAAGAGCCTTGGCTTGT
CTGGAGTCAAAAGCCATCCACACAGAAGCAAAAAGGAACACAAACGAGCA
AATTATCTCAAGCCAAAGGGCCTGCCTAGTCCCCAAGCCGATCTCAACAG
GCCCATCTGGCCCAGGTACCACAACATTCAGGGTGCAGCCTCCAAGTGAA
AAATTATGTGCAATTTTCTTGGTCACCACAGCTTCTAGTGCTAGTGCACC
GAAAATGCCACCAACACATTGAGCCAAAATGTATATGGCTGCCCTTGTGA
AGGATGTGATGCCAGTGAGTGCTGCAGCAAAGGACACTAATGGGTTGATG
TGC
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