CF838130

Overview
NameCF838130
Unique NameCF838130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838130 vs. ExPASy Swiss-Prot
Match: PNAE_RAUSE (Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.200e-17
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 GIYVNKIEEAPTFYEYTEPLVEVLDSLPAEEKDILVGHSFGGLSLALGADTFPHKISGAIFLTAFMPDTKHQPSY 225
            GI   +++E  TF +Y+EPL+EV+ S+P +EK +L+GHSFGG+SL L  +T+P KIS A+F++A MPD  H  +Y
Sbjct:   49 GINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTY 123          
BLAST of CF838130 vs. ExPASy Swiss-Prot
Match: HNL_HEVBR (Hydroxynitrilase OS=Hevea brasiliensis GN=HNL PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.036e-16
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GIYVNKIEEAPTFYEYTEPLVEVLDSLPAEEKDILVGHSFGGLSLALGADTFPHKISGAIFLTAFMPDTKHQPSYVGDNLLD 246
            G+   +IEE  +F EY+EPL+  L++LP  EK ILVG S GGL++A+ AD +  KI+ A+F  + +PDT+H PSYV D L++
Sbjct:   42 GVDPRQIEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLME 123          
BLAST of CF838130 vs. ExPASy Swiss-Prot
Match: HNL_MANES (Hydroxynitrilase OS=Manihot esculenta GN=HNL PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.259e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 GIYVNKIEEAPTFYEYTEPLVEVLDSLPAEEKDILVGHSFGGLSLALGADTFPHKISGAIFLTAFMPDTKHQPSYVGDNLLD 246
            GI   +IE+  +F EY+EPL+  L+ LP  EK I+VG S  GL++A+ AD +  KI+  +F  + +PDT H PSY  + LL+
Sbjct:   42 GIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLE 123          
The following BLAST results are available for this feature:
BLAST of CF838130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PNAE_RAUSE3.200e-1750.67Polyneuridine-aldehyde esterase OS=Rauvolfia serpe... [more]
HNL_HEVBR6.036e-1648.78Hydroxynitrilase OS=Hevea brasiliensis GN=HNL PE=1... [more]
HNL_MANES1.259e-1343.90Hydroxynitrilase OS=Manihot esculenta GN=HNL PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05M17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838130 ID=CF838130; Name=CF838130; organism=Citrus sinensis; type=EST; length=256bp
GGCATCTACGTGAACAAAATCGAGGAAGCTCCTACATTTTATGAATACAC
CGAGCCCTTGGTGGAGGTTCTGGACTCCCTTCCTGCAGAAGAGAAAGACA
TACTTGTCGGACACAGCTTTGGAGGCTTGAGTTTGGCCCTGGGAGCTGAC
ACATTCCCGCACAAAATTTCAGGTGCTATTTTCTTAACAGCATTCATGCC
GGACACCAAACACCAACCGTCTTATGTTGGGGATAACCTTTTGGACGGGA
TTTCAA
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