CF838131

Overview
NameCF838131
Unique NameCF838131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.612e-68
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = -3
Query:  306 DYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLA 725
            DYH YTILW+H HIVFYVDDVPIR YKN+      +P +QPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYY+DFDIEGCPVPGP  C SNP NWWE   YQ+L A+EARRYRWVR+NHM+YDYCTD+SR+PVPPPEC A
Sbjct:  151 DYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 292          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 6.375e-65
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = -3
Query:  300 DYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLAGI 725
            D+H Y I WNH  IVFYVD+VPIRVYKN+   + P+P  QPMGVYSTLWEADDWATRGG+EKI+WS+APFYAYY+DFDIEGCPVPGPA+C +N  NWWE + Y  L+ +EAR YRWVR+NHM+YDYCTDKSR+PVPPPEC AGI
Sbjct:  150 DFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.132e-44
Identity = 79/141 (56.03%), Postives = 99/141 (70.21%), Query Frame = -3
Query:  312 DYHLYTILWNHHHIVFYVDDVPIRVYKNSGRA--PFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 725
            DYH Y++LWN + IVF+VDDVPIRV+KNS      FP NQPM +YS+LW ADDWATRGGLEK +W KAPF A YR F ++GC     A  C +    WW+   +Q L A + +R +WVR  + IY+YCTD+ R+PVPPPEC
Sbjct:  147 DYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPEC 287          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  312 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN---CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 722
            YH Y++LWN + IV +VDDVPIR +KNS      FP NQPM +YS+LW+ADDWATRGGLEK +W+ APF A Y  F ++GC    P     C +    WW+   +Q L A++ RR RWVR  + +Y+YCTDK+RYPVPPPEC
Sbjct:  149 YHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.606e-42
Identity = 77/142 (54.23%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  312 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN---CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 722
            YH Y++LWN   IV +VDDVPIR +KNS      FP NQPM +YS+LW+ADDWATRGGLEK DWS APF A Y  F ++GC    P     C +    WW+   +Q L A++ RR RWVR  + IY+YCTD+ RYP  PPEC
Sbjct:  148 YHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPEC 289          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.207e-41
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = -3
Query:  312 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 722
            YH Y++LWN + IVF+VD++PIRV+KN+      FP NQPM +YS+LW ADDWATRGGLEK +W+ APF A YR F I+GC     A  CA+    WW+ N ++ L A + RR +WVR+   IY+YCTD++R+PV P EC
Sbjct:  150 YHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAEC 289          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.764e-41
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  312 DYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYP-VPPPEC 725
            +YH Y+ILWN + IVF+VD+VPIRV+KNS      FP +QPM +Y++LW ADDWATRGGLEK DWSKAPF A Y+ F I+GC     A  C +    WW+   ++ L A + RR RWVR  + IY+YCTD  RYP + PPEC
Sbjct:  148 EYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPEC 289          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.916e-41
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = -3
Query:  312 DYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 725
            DYH Y++LWN + I F+VDD PIRV+KNS      +P +QPM +YS+LW ADDWATRGG EK DWSKAPF A YR F ++GC     A  CA+    WW+   +Q L A + RR  WVR  H IY+YCTD  RY    PEC
Sbjct:  147 DYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPEC 287          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.916e-41
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = -3
Query:  312 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 722
            YH Y++LWN + IVF VD++PIRV+KN       FP NQPM VY++LW ADDWATRGGLEK DWSKAPF A Y+ F ++GC     +  CA+    WW+   ++ L + + RR +WVR    IY+YCTD++RYP  PPEC
Sbjct:  148 YHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPEC 287          
BLAST of CF838131 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.430e-40
Identity = 75/140 (53.57%), Postives = 94/140 (67.14%), Query Frame = -3
Query:  312 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPAN-CASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 722
            YH Y++LWN + IVFYVDD PIRV+KNS      FP NQPM +Y++LW ADDWATRGGLEK DWSKAPF A Y+ F I+GC     A  C +    WW+   ++ L A + ++  WVR  + IY+YCTD+ RY   PPEC
Sbjct:  147 YHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPEC 286          
The following BLAST results are available for this feature:
BLAST of CF838131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH6_ARATH3.612e-6878.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH6.375e-6573.61Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.132e-4456.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC2.357e-4354.23Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC2.606e-4254.23Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB2.207e-4153.57Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH_SOYBN3.764e-4154.93Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT4.916e-4153.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN4.916e-4152.86Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN1.430e-4053.57Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838131 ID=CF838131; Name=CF838131; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTCAAATTATGAAGAGGCTTTTATTGGCACACAAT
ACTGTGCATCAAATTCAGACTTATATATGGTACAAGCGGAGCAAAATACC
CACATATTTCCCACTCCCATAATCACATTTAAAAGCACACAATGTTTATT
TTCCCTCCTGCCCCTCCCTTGATATGCGTATAAGTCTTTTCACACGAATA
GGGAATAATACAAAGGACGTGTACGTGAAGTAATATACATGATATGATAC
GGATATGGAGTACCGTCCAACTGCTTAATTAATTGGCGGGTTGAATTTAT
ATGCCGGCAAGGCATTCCGGTGGGGGTACTGGGTATCTTGATTTATCAGT
GCAATAATCATAGATCATGTGGTTGAGACGAACCCATCTGTATCTTCTTG
CTTCCATGGCGGTGAGGGCTTGATAATTATTTGCCTCCCACCAGTTACCT
GGGTTCGAGGCACAGTTTGCTGGTCCAGGAACTGGGCAGCCCTCAATATC
AAAGTCTCTGTAATAAGCATAAAAAGGAGCTTTGCTCCAATCTATTTTCT
CTAGACCACCTCTTGTTGCCCAGTCATCTGCTTCCCACAGCGTCGAATAC
ACCCCCATGGGTTGGTTCATTGGAAATGGAGCCCTTCCACTGTTTTTGTA
AACCCTGATGGGCACATCATCCACATAGAAGACAATATGGTGATGGTTCC
AGAGAATAGTGTAAAGGTGATAATCTGCAGCAG
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