CF838137

Overview
NameCF838137
Unique NameCF838137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.048e-40
Identity = 106/260 (40.77%), Postives = 132/260 (50.77%), Query Frame = 3
Query:   51 MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF--------------XXXXXXXXXXXXKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDV 770
            MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK E  +       + +  E   +R RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT            K+IRGDKAKLNF                          KK C+ S    EL+QP F          P   +GFG  +EF       + +++L QQIS LESFL L+   ++    +      VD WMLDDV
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVK-------KEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDV 243          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 59/139 (42.45%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   51 MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            MCGGA+I+D+                +WS+  S    LG   + K   ++P+ V                 +E+  +R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T             +IRG KAKLNF
Sbjct:    1 MCGGAIISDF----------------IWSKSESEPSQLGSVSSRKK--RKPVSVS----------------EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 64/183 (34.97%), Postives = 77/183 (42.08%), Query Frame = 3
Query:   51 MCGGALIADYDEVRPVRRERKLTSEDLW-----------------SEFGSISDLLGLDYNG---------------------------KSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            MCGGA+I+D+    P  R R++TSE +W                 S F         D+ G                            S PK  +    E +             EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T            +RIRG KAK+NF
Sbjct:    1 MCGGAIISDFI---PPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18
Identity = 66/186 (35.48%), Postives = 83/186 (44.62%), Query Frame = 3
Query:   51 MCGGALIADYDEVRPVRRERKLTSEDLW-----------------SEFGSISDLLGLDYNG--------------------------KSHPKQPLKVKNEKAEDSSNKAART----EWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            MCGGA+I+D+    P  R  ++T+E +W                 S+F  + D    D+ G                           + P     V        S  A +T    E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T            +RIRG KAK+NF
Sbjct:    1 MCGGAIISDFI---PPPRSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  270 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+            +RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  255 TEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            ++ K+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT            KRIRG KAKLNF
Sbjct:   15 SDGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  228 EDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T             R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 56/136 (41.18%), Postives = 66/136 (48.53%), Query Frame = 3
Query:  264 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGTPPAPAP--SPWVGFGYQNEFYQPRAVDDEFELSQQI 665
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAKLNF              +  PSP  +  R   I TPP+P P  +P +       F Q R+ D    LS  +
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPPPIAPDILLDQYGHF-QSRSSDSSANLSMNM 185          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 40/74 (54.05%), Postives = 44/74 (59.46%), Query Frame = 3
Query:  246 AARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            +A T+  E      R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T             R RG KAKLNF
Sbjct:   43 SAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CF838137 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 36/61 (59.02%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  285 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 467
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of CF838137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RAP23_ARATH2.048e-4040.77Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.168e-1942.45Ethylene-responsive transcription factor ERF071 OS... [more]
RA212_ARATH1.526e-1934.97Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.687e-1835.48Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ2.877e-1865.15Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF73_ARATH2.062e-1659.15Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH2.062e-1653.75Ethylene-responsive transcription factor ERF110 OS... [more]
EF112_ARATH3.517e-1641.18Ethylene-responsive transcription factor ERF112 OS... [more]
RAP26_ARATH5.078e-1554.05Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH1.930e-1459.02Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838137 ID=CF838137; Name=CF838137; organism=Citrus sinensis; type=EST; length=775bp
TCTTAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGACAATTAAT
ATGTGTGGCGGTGCACTTATTGCCGATTATGATGAAGTCAGGCCGGTCAG
GCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTTCCA
TTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAGCAA
CCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGCTGC
TCGTACTGAGTGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACGTGT
ACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATTAGA
GACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGCCGA
AGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCGACA
AGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCCCCG
GCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATTTGA
AACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGTTTG
GGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTTGAG
CTGAGCCAGCAAATTTCGCGCTTGGAATCGTTTTTGGGATTGGAGCCATT
AATGAGTCAGCCGAGTGGAAACGTTGCTGGTGGGTGTGACTCGGTGGACT
TTTGGATGCTTGATGACGTGGCGGC
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