CF838143

Overview
NameCF838143
Unique NameCF838143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  396 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 683
            EALAILAIL+++QEGKTAI +AE IPVL+E+IRTGSPRNRENAAA+LW +C G+ E+L +ARE+ A+ ALKEL+E+GTDRAKRKA S+LEL+Q+ +
Sbjct:  529 EALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQTE 624          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = -1
Query:  399 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 683
            EALAILAIL+SH EGK  IG ++ +P L+E IRTGSPRNRENAAAVL  +C+GD + L  A++L     L +L+ +GTDR KRKA  +LE + R+
Sbjct:  536 EALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRL 630          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = -1
Query:  402 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR--ELDAEEALKELSESGTDRAKRKAGSILELLQR 683
            EA+AIL+IL+SH EGK AIG AEP+PVL+E+I +G+PRNRENAAAV+  +C+G+   + +AR  E      L+EL+ +GTDR KRKA  +LE + R
Sbjct:  551 EAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSR 646          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = -1
Query:  402 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR--ELDAEEALKELSESGTDRAKRKAGSILELLQR 683
            EA+AIL+IL+SH EGK AIG AEP+PVL+E+I +G+PRNRENAAAV+  +C+G+   + +AR  E      L+EL+ +GTDR KRKA  +LE + R
Sbjct:  551 EAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSR 646          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  396 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 683
            E+L+ILAIL+SH +GK+ +G A+ +PVL++ IR+GSPRN+EN+AAVL  +C+ + + L  A++L   + L E++E+GTDR KRKA  +L    R +
Sbjct:  541 ESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFN 636          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  381 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMAVNS 683
            EAL IL++LAS+Q  KTAI +A  IP L++ ++   PRNRENAAA+L  +C  D E+L     L A   L ELS  GT+RAKRKA S+LELL++    + S
Sbjct:  527 EALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKSSRKLGS 627          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = -1
Query:  402 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 683
            EAL IL++LA++Q+ K+AI +A  +P L+ +++T   RNRENAAA+L ++C  D E+L     L A   L +LS++GT+R KRKA S+LELL++
Sbjct:  516 EALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609          
BLAST of CF838143 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 40/94 (42.55%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  402 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 683
            EAL+IL +LASH EG+ AIGQ   I  L+E IR G+P+N+E A +VL  + + ++  +  A +    E L E++ SGT+RA+RKA ++++L+ +
Sbjct:  563 EALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLISK 656          
The following BLAST results are available for this feature:
BLAST of CF838143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PUB14_ARATH3.701e-3269.79U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB13_ARATH5.923e-2256.84U-box domain-containing protein 13 OS=Arabidopsis ... [more]
SL11_ORYSJ5.014e-2155.21Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI5.014e-2155.21Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB12_ARATH3.593e-1947.92U-box domain-containing protein 12 OS=Arabidopsis ... [more]
PUB10_ARATH2.329e-1850.50U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB11_ARATH5.737e-1747.87U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB15_ARATH5.937e-1442.55U-box domain-containing protein 15 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838143 ID=CF838143; Name=CF838143; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTAAAAGAACACATATCATTTCTATATTTAATCAC
AAGAATTAATGCAAATCTCTATACTTCAGTGAATTTATACAAAATAAAAT
GAAATTGCACATTGGTTTGCTACACAAGTACAACTTCTTTGTGCTGATCC
TTTTCCACTTTTAATTGCTGGCAGTTCTCCAATTAATCTCACCATCCTCG
CATACTCGCATAATTTCTCTGTACATAGAATAGAACGGCCCATTTTGAAA
CATTGACGTATATAACACTAGAACACTCATATTTTCTTCAGAGTTTCTTG
AAATATATCTATATGTTAGTGCCTTTTCATCCCCCAATGGGGCACCGAAA
GAATTCTTGACACTGAAACTTGGATTATTGAGAATTAACAGCCATATCAA
TCCTTTGAAGGAGCTCTAGTATACTACCAGCTTTTCTCTTGGCTCTGTCG
GTACCACTCTCGGAGAGTTCCTTCAATGCCTCTTCTGCATCAAGTTCCCT
TGCTATTTTTAACTGCTCCGCATCACCTGTGCATATTGCCCACAATACTG
CTGCAGCATTCTCCCGGTTGCGTGGAGAACCAGTTCTTATAACCTCCATC
AAAACTGGAATTGGCTCAGCCTGACCGATTGCTGTCTTCCCTTCTTGATG
ACTAGCGAGAATAGCCAAAATTGCCAGTGCTTC
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