CF838144

Overview
NameCF838144
Unique NameCF838144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 84/148 (56.76%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  295 EVLSRLVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHD 738
            E++SRLV SVKE+SG    + F  K+ G+LVRRI LLSP FEEL D N  L +++I GFE +R ALDSS+EL +S N GSKL+Q   RD +  +F  +T +IEAALS IPY+K+++SEEVREQ++L+H QF+RAK R +  DLQL HD
Sbjct:   11 ELMSRLVDSVKEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVELKKDQITGFEAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHD 158          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.088e-27
Identity = 61/149 (40.94%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  292 AEVLSRLVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHD 738
            A     L+  V E++ + + +   KK+  NL RR+KLL P+FEE+R+ NE +S++ +K    L++A+ S+ + LK  + GSK+Y  ++R+++ ++  +++ ++E +LS IPY++LD+S+EVREQ+ELV  QFRRAKGR D  D +L  D
Sbjct:    6 ASAAQSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYED 154          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  292 AEVLSRLVASVKEVS-----GLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGN--EGLSQEEIKGFELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHD 738
            A  + R+ A+V+ V+     G  E +N +++    L RRI+LL P  EELR+    EG  +EE +    L DAL++++ LL+   +GS++   L+RD +  +F  +  Q+E AL DIPY++LD+S+EVREQ+ELVH Q +RAK R D PD +  +D
Sbjct:   21 AAAVERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYND 176          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  292 AEVLSRLVASVKEVS-----GLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGN--EGLSQEEIKGFELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHD 738
            A  + R+ A+V+ V+     G  E +N +++    L RRI+LL P  EELR+    EG  +EE +    L DAL++++ LL+   +GS++   L+RD +  +F  +  Q+E AL DIPY++LD+S+EVREQ+ELVH Q +RAK R D PD +  +D
Sbjct:   21 AAAVERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYND 176          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 50/132 (37.88%), Postives = 83/132 (62.88%), Query Frame = 1
Query:  310 LVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGR 705
            L+ S+ E++ + +     KK   NL RR+ LL P+ EE+RD  E  S E +     ++ +L  + +LL   +  SK+Y  L+RD++  +F ++T  +E ALS IPY+ L++S+E++EQ+ELV VQ RR+ G+
Sbjct:   13 LIDSINEIASISDSVTPMKKHCANLSRRLSLLLPMLEEIRDNQES-SSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALSIIPYENLEISDELKEQVELVLVQLRRSLGK 143          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  289 GAEVLSRLVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGN--------EGLSQEEIKGFELLRDALDSSVELLKS-TNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGR 705
            GA     L+  + E++ +P     FKK   +L RR+ LL+ L EE+RD +          L+  E   +  L   L ++  LL S T+  ++        +I+ QF  +T ++E AL D+ YD+ D+S+EVREQ+EL  +Q RRA  R
Sbjct:    4 GAITPDSLIGLIAEINEIPGNFGLFKKDCSDLARRVGLLTHLIEEIRDSSPPSESDASSSLNSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLTYDRYDISDEVREQVELARLQLRRAMQR 151          
BLAST of CF838144 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 43/148 (29.05%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  298 VLSRLVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGF-ELLRDALDSSVELLKSTNDGSKLYQCLQRDKIAAQFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQFRRAKGRPDSPDLQLDHD 738
            ++S +V+ V+ +  +   +   +K   NLVRR+K+L P  +E+R    G      K F   LR    ++ +LL++ ++GSK+Y  L  + +  +FH + E++   L   P+D+L +S + +++I+ +  Q ++AK R D+ D++L  D
Sbjct:   53 LVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIR----GFESPSCKHFLNRLRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAKDEIDSLCKQLKKAKRRTDTQDIELAVD 196          
The following BLAST results are available for this feature:
BLAST of CF838144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUB14_ARATH3.851e-4156.76U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB13_ARATH1.088e-2740.94U-box domain-containing protein 13 OS=Arabidopsis ... [more]
SL11_ORYSJ2.508e-2441.03Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI2.508e-2441.03Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB12_ARATH1.860e-1937.88U-box domain-containing protein 12 OS=Arabidopsis ... [more]
PUB10_ARATH1.686e-1233.78U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB15_ARATH2.202e-1229.05U-box domain-containing protein 15 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838144 ID=CF838144; Name=CF838144; organism=Citrus sinensis; type=EST; length=739bp
CTTCTTTTCTTCTTATTTCACAAGAACCCATTTGAATTCACTCAATTTCC
ACATCTGGGTATCTCTTATTTCCATTGAAAACTTTCAGTATTGGAATCAA
GTTTTAATTTTTTGTTTTTGGGTCTGTTTCGCAATTGAACTCAGTTAACT
CACGTGAAAACCCAATTGAATTTTACTTTAGTTTAACTTCTAACTCTAGT
TACCAGATTGAATCTTGATTGTTTATTGATTTATCCAATCGGGGTTGGTG
GTTGAATTTTGGTGAAGAAAATGGCAGTTACAAATCCTGGCGCTGAGGTA
TTGAGTCGACTTGTTGCCTCAGTGAAGGAGGTGTCTGGGTTACCCGAGTG
CAAAAACTTTTTCAAGAAAATGCATGGGAATCTGGTACGTAGAATCAAGT
TATTGAGTCCTTTGTTTGAGGAATTGAGAGATGGCAACGAAGGGCTTAGT
CAAGAAGAGATTAAAGGCTTTGAATTGTTGAGAGATGCTTTGGATTCGTC
TGTTGAGCTTCTCAAATCAACCAATGACGGAAGTAAGCTGTATCAGTGTT
TGCAAAGGGATAAGATTGCAGCACAGTTTCATCAACTGACAGAACAAATT
GAAGCAGCACTGAGTGACATTCCATATGATAAACTTGATTTGTCTGAGGA
AGTTCGAGAACAGATTGAACTCGTGCATGTTCAATTCAGAAGAGCAAAAG
GAAGACCAGACTCACCTGATTTGCAACTGGATCATGATT
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