CF838145

Overview
NameCF838145
Unique NameCF838145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838145 vs. ExPASy Swiss-Prot
Match: DI191_ORYSJ (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.531e-28
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = -3
Query:  251 MLSHIT*QHGHLFKLQXXXXXXRVAIHSSQALSLMGRDLREAHLQVLLGGSGYRXXXXXXXXXXA-DPFLSSLILNFPSSEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 682
            ML+HIT QHG+LFK +         I  SQALSL+ RDLREAHLQVLLGG G+R          + DP LSS  L+FP+S+ EE SK  ++  +D S     P   W +S D SL+ EERE++ +Q + RA+FVQDLLL+TL  D
Sbjct:   84 MLNHITVQHGYLFKNRRRLRRF--VIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDDASVIKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD 226          
BLAST of CF838145 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 71/145 (48.97%), Postives = 90/145 (62.07%), Query Frame = -3
Query:  251 MLSHIT*QHGHLFKLQXXXXXXRVAIHSSQALSLMGRDLREAHLQVLLGGSGYRXXXXXXXXXXADPFLSSLILNFPSSEAEEISK-SVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 682
            +L HIT QH +LF+LQ      RVA+ S+ ALSL GRDL+E +L+VLLG S  R           D  LSSL+LN  SSEAE+ +K S +   E+   K   P+  WK S D +LS EERE+R R+ A R+SFVQ LL+STL  D
Sbjct:  102 LLDHITLQHSYLFRLQRHHRLRRVAVPSNHALSLGGRDLQETYLKVLLGNSS-RSSGTNAASSVTDSLLSSLVLNLSSSEAEDTAKFSALAVVENNWFKRTLPSKTWKASSDSNLSQEERERRRRRAAVRSSFVQHLLVSTLFDD 245          
BLAST of CF838145 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  251 MLSHIT*QHGHLFKLQXXXXXXRVAIHSSQALSLMGRDLREAHLQVLLGGSG-YRXXXXXXXXXXADPFLSSLILNFPSSEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 682
            ML+HIT QHG+LFK        R  I  SQALSL+ RDLR+A LQ LLGG    R          ADP LSS  L F + ++EE SK+ V   +DTS     P   W++  D SL+ EERE++ +Q   RA+FVQ L+LSTL  D
Sbjct:  104 MLNHITMQHGYLFK--SGRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDSEERSKAPVPIPDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGLVLSTLFED 246          
BLAST of CF838145 vs. ExPASy Swiss-Prot
Match: DI192_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = -3
Query:  251 MLSHIT*QHGHLFKLQXXXXXXRVAIHSSQALSLMGRDLREAHLQVLLGGSGYRXXXXXXXXXXADPFLSSLILNFPSSEAEEISKSVVTSTEDTSAKSAAPTHMWKTSFDPSLSHEEREKRIRQGAGRASFVQDLLLSTLLID 682
            ++ H+T QHG  FK+Q      +++  S   LSL+ +DLR+  LQ  LGGS Y            DPFLSSLI + P +E  +   S   S+++    +  P        +PSLS +++++R    A R+ FV+ L+LST+  D
Sbjct:   96 LIGHLTMQHGSYFKMQRRRRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSY---VSNPPAAAPDPFLSSLICSLPVAEPSKDLHS--DSSDNNFLLNKFPDDKTAERAEPSLSEKDQKER----AQRSKFVRGLVLSTIFED 230          
The following BLAST results are available for this feature:
BLAST of CF838145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DI191_ORYSJ5.531e-2849.66Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa sub... [more]
DI194_ORYSJ2.569e-2548.97Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]
DI193_ORYSJ1.559e-2246.90Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]
DI192_ORYSJ2.494e-1234.03Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_05N04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838145 ID=CF838145; Name=CF838145; organism=Citrus sinensis; type=EST; length=684bp
AGTTTTCATTTTACATAAATTGGAAGACTATTGTTTATCCAGAAATGCAG
GACATCTGGAGATGAGAAGCAGCTGAGGATTGGGCCATTATCACGAAGCA
CCAACTCTTCTGCCGGTTCCACATCAAAATAAGGAATTGATTGGCTGGTT
AATTTATGTAGACCTATTAAACTCCCTCCCAGATATACCCATGTGAAGAT
TTTGAGTTACTCCTTCCATTATTTTCAAAGTAAACTTACCGTCTCCATTA
GTCAATCAACAGAGTTGACAGAAGTAGATCTTGCACAAAACTGGCTCTCC
CAGCACCTTGCCTAATCCTTTTTTCCCGCTCTTCATGACTCAAAGAAGGA
TCAAAACTTGTTTTCCACATATGAGTTGGTGCAGCACTTTTTGCACTAGT
ATCTTCAGTACTGGTTACAACAGATTTTGAAATTTCCTCAGCTTCTGATG
AAGGAAAATTCAAAATAAGAGAAGAAAGAAAAGGATCGGCAGCTGCATTA
GAGATGTTAGCATTGCTAGACCGATATCCACTACCCCCTAAAAGCACTTG
CAGATGAGCTTCACGAAGATCCCGGCCCATGAGAGAGAGTGCTTGACTGC
TATGAATTGCAACTCTACGTAATCTGCGACGTCTCTGCAACTTGAACAAG
TGTCCATGCTGCTAAGTAATATGACTTAACATGT
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